|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Deletion
|
DE(tonB-cysB)206
,
OCR68,69-1
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
yciB
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
yciB
Search strains by all related name:
yciB b1254 ECK1248 ispA JW1246
|
General information (Go to Linear View: )
|
|
Gene Name
|
yciB
|
|
Alternative name
|
b1254,ECK1248,ispA,JW1246
|
|
Location, Length
|
1,310,375 - 1,310,914
(
-
)
;
28.24
min
;
540
(bp) ,
179
(aa)
|
|
Product
|
putative inner membrane protein
|
|
Operon Name
|
yciCB
|
|
Note
|
|
|
Function
|
|
|
Gene Ontology
|
GO:0004337
;
geranyltranstransferase activity ( ispA )
GO:0005737
;
cytoplasm ( ispA )
GO:0008299
;
isoprenoid biosynthetic process ( ispA )
GO:0016740
;
transferase activity ( ispA )
|
|
PID
|
1787507
|
EC number
(KEGG Pathway)
|
|
|
SWISS-PROT
(
Show details
)
|
Entry name(Acc.no)
|
ISPZ_ECOLI
(
P21366
;
P94721; P94725; P94735; P94738
)
|
|
- Protein name
|
Probable intracellular septation protein.
|
|
- Synonyms
|
|
|
- Gene name
|
Name=ispZ; OrderedLocusNames=b1254, z2032, ECs1754;
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
ispA
(
homologous genes of other bacterias
)
yciB
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
Chain B, The Three-Dimensional Structure Of Shikimate Kinase From Erwinia Chrysanthemi Complexed With Adp
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
Probable intracellular septation protein
|
|
PSI-BLAST
|
Probable intracellular septation protein
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
hypothetical protein SDY_1318 [Shigella dysenteriae Sd197]
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
|
| Sequences |
Amino acid
FASTA format
|
0001 MKQFLDFLPL VVFFAFYKIY DIYAATAALI VATAIVLIYS WVRFRKVEKM ALITFVLVVV FGGLTLFFHN
0071 DEFIKWKVTV IYALFAGALL VSQWVMKKPL IQRMLGKELT LPQPVWSKLN LAWAVFFILC GLANIYIAFW
0141 LPQNIWVNFK VFGLTALTLI FTLLSGIYIY RHMPQEDKS
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 ccttgagcaa cctgatttca gccatattgc
-070 tcatctatct gttccgcctg tatatgttga ttcgccaata accttaagca tttgattacg gaatcgtaaa
0001 atgaagcagt ttcttgattt tttaccgctg gttgtctttt tcgcgtttta caagatttat gacatctatg
0071 cggctactgc ggcgctgatc gtcgccacgg cgattgtgct tatctatagc tgggttcgct ttcgtaaggt
0141 tgagaagatg gccctgatca cttttgttct ggtggtcgtc ttcggtggct tgacgctgtt cttccacaat
0211 gatgagttta ttaaatggaa ggttactgtc atttatgctc tatttgcggg agccctgtta gtcagccaat
0281 gggtgatgaa aaagccgcta attcagcgga tgctgggtaa agaactcacg ctgccgcaac cggtatggtc
0351 gaagctgaat ctggcctggg ctgttttctt tatcctttgc ggtctggcaa acatctacat cgcattctgg
0421 ctgccgcaaa atatttgggt caactttaaa gtctttggcc tgaccgccct taccttaatc ttcacattgt
0491 taagcggtat ctatatctac cgccacatgc cgcaggaaga taaatcctaa ccagactgcc agtccttcgg
0561 ggctggcgct gtatctcctc tgttctcctc aggaaaatca tagtagcatc gcgcctgtga ttttcctttt
0631 aagtcggttt
|
