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PEC Original Annotations
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|
Essentiality
|
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Class
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non-essential
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|
References (PMID)
|
Escherichia coli and Salmonella, Cellular and Molecular Biology Second Edition. ASM Press. 1996
Neidhart, F.C.
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|
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Deletion
|
OCR68
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
rssB
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
rssB
Search strains by all related name:
rssB b1235 ECK1230 hnr JW1223 mviA sprE verA ychL
|
General information (Go to Linear View: )
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|
Gene Name
|
rssB
|
|
Alternative name
|
b1235,ECK1230,hnr,JW1223,mviA,sprE,verA,ychL
|
|
Location, Length
|
1,289,465 - 1,290,478
(
+
)
;
27.79
min
;
1014
(bp) ,
337
(aa)
|
|
Product
|
response regulator binding RpoS to initiate proteolysis by ClpXP; required for the PcnB-degradosome interaction during stationary phase
|
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Operon Name
|
rssAB
|
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Note
|
Hnr protein; GO_component: GO:0005737 - cytoplasm; GO_process: GO:0006350 - transcription
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|
Function
|
regulator; Basic proteins - synthesis, modification
|
|
Gene Ontology
|
GO:0000156
;
two-component response regulator activity ( hnr )
GO:0000160
;
two-component signal transduction system (phosphorelay) ( hnr )
GO:0003677
;
DNA binding ( hnr )
GO:0005515
;
protein binding ( hnr )
GO:0006350
;
transcription ( hnr )
GO:0006355
;
regulation of transcription, DNA-dependent ( hnr )
|
|
PID
|
1787487
|
EC number
(KEGG Pathway)
|
|
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SWISS-PROT
(
Show details
[
1
more]
)
|
Entry name(Acc.no)
|
HNR_ECOLI
(
P37055
)
|
|
- Protein name
|
Hnr protein.
|
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- Synonyms
|
|
|
- Gene name
|
Name=hnr; OrderedLocusNames=b1235, z2011, ECs1737, SF1235, S1321;
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Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
rssB
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
Chain A, Response Regulator Pled In Complex With C-Digmp
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
Protein hnr
|
|
PSI-BLAST
|
Chemotaxis response regulator protein-glutamate methylesterase
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
Hnr protein [Escherichia coli O157:H7 EDL933]
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
ASN_GLYCOSYLATION
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
MYRISTYL
RGD
LEUCINE_ZIPPER
|
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MMBR References
|
Mol Microbiol. 1996;21(5):887-93.
Back to log phase: sigma S as a global regulator in the osmotic control of gene expression in Escherichia coli.
Hengge-Aronis R.
(
8885260
)
|
EMBO J. 1996;15:1333-1339
The response regulator RssB controls stability of the sigma S subunit of RNA polymerase in Escherichia coli.
Muffler, A., D. Fischer, S. Altuvia, G. Storz, and R. Hengge-Aronis.
|
Proc Natl Acad Sci U S A. 1996;93:2488-2492
The response regulator SprE controls the stability of RpoS.
Pratt, L. A., and T. J. Silhavy.
|
J Bacteriol. 1998;180:1154-1158
Regulation of proteolysis of the stationary-phase sigma factor RpoS.
Zhou, Y., and S. Gottesman.
|
| Sequences |
Amino acid
FASTA format
|
0001 MTQPLVGKQI LIVEDEQVFR SLLDSWFSSL GATTVLAADG VDALELLGGF TPDLMICDIA MPRMNGLKLL
0071 EHIRNRGDQT PVLVISATEN MADIAKALRL GVEDVLLKPV KDLNRLREMV FACLYPSMFN SRVEEEERLF
0141 RDWDAMVDNP AAAAKLLQEL QPPVQQVISH CRVNYRQLVA ADKPGLVLDI AALSENDLAF YCLDVTRAGH
0211 NGVLAALLLR ALFNGLLQEQ LAHQNQRLPE LGALLKQVNH LLRQANLPGQ FPLLVGYYHR ELKNLILVSA
0281 GLNATLNTGE HQVQISNGVP LGTLGNAYLN QLSQRCDAWQ CQIWGTGGRL RLMLSAE
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 AACATTTGAC CAGAATTTTT ATCTACACTT
-070 AAGTTAATTC TGACAGGCGC AGGTGGCAAT AGCATGCCAC TATTGAGTAA AGCCAGTCAG GGGAGAGAAC
0001 atgacgcagc cattggtcgg aaaacagatt ctcattgttg aagatgagca ggtatttcgc tcgcttctgg
0071 attcatggtt ttcctcattg ggagcgacaa cggtactggc ggctgatggg gtggatgccc ttgagttgct
0141 gggaggtttc actccagacc tgatgatatg tgatatcgcg atgccacgaa tgaacgggct taaactgctg
0211 gagcatatac gtaacagagg cgaccagacc ccagttctgg tgatatctgc cactgaaaat atggcagata
0281 ttgccaaagc gttacgtctg ggcgttgaag atgttttgct gaaaccagtt aaagatctga atcgcttgcg
0351 cgagatggtt tttgcctgtc tctatcccag catgtttaat tcgcgcgttg aggaagagga aaggcttttt
0421 cgcgactggg atgcaatggt tgataaccct gccgcagcgg cgaaattatt acaggaacta caaccgccgg
0491 ttcagcaggt gatttcccat tgccgggtta attatcgtca attggttgcc gcggacaaac ccggcctggt
0561 gcttgatatt gccgcacttt cggaaaacga tctggcattt tattgccttg atgtcacccg agctggacat
0631 aatggcgtac ttgctgcctt gttattacgc gcattgttta acggattatt acaggaacag cttgcacacc
0701 aaaatcaacg gttgccagag ttgggcgcgt tattgaagca ggtaaaccat ttacttcgtc aggccaatct
0771 gccggggcag tttccgctat tagttggcta ttatcatcgc gaactgaaaa atctcattct ggtttctgcg
0841 ggtctgaatg cgacgttaaa taccggcgaa caccaggtgc aaatcagtaa tggtgttccg ttaggcactt
0911 taggtaacgc ttatttgaat caattgagcc agcgatgcga tgcctggcaa tgccaaatat ggggaaccgg
0981 tggtcgactg cgcttgatgt tgtctgcaga atgaGCAAAC GATAACGCGG GCTAAATTTG CATTACCTGC
1051 TAATGTCGGC TGGTGGTACT ATCGTCGCCA TTCGTATAAG TAATTGTCTT AATTATGCTA ACTC
|
