|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Deletion
|
OCR68
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
ychJ
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
ychJ
Search strains by all related name:
ychJ b1233 ECK1228 JW1221
|
General information (Go to Linear View: )
|
|
Gene Name
|
ychJ
|
|
Alternative name
|
b1233,ECK1228,JW1221
|
|
Location, Length
|
1,287,897 - 1,288,355
(
-
)
;
27.76
min
;
459
(bp) ,
152
(aa)
|
|
Product
|
conserved protein, UPF0225 family
|
|
Operon Name
|
ychJ
|
|
Note
|
|
|
Function
|
|
|
Gene Ontology
|
GO:0005515
;
protein binding ( ychJ )
|
|
PID
|
1787484
|
EC number
(KEGG Pathway)
|
|
|
SWISS-PROT
(
Show details
[
2
more]
)
|
Entry name(Acc.no)
|
YCHJ_ECOLI
(
P37052
)
|
|
- Protein name
|
Hypothetical UPF0225 protein ychJ.
|
|
- Synonyms
|
|
|
- Gene name
|
Name=ychJ; OrderedLocusNames=b1233;
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
ychJ
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
Chain A, Crystal Structure Of Hypothetical Protein
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
UPF0225 protein ychJ
|
|
PSI-BLAST
|
UPF0225 protein ychJ
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
hypothetical protein b1233 [Escherichia coli K12]
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
MYRISTYL
AMIDATION
|
| Sequences |
Amino acid
FASTA format
|
0001 MSQLCPCGSA VEYSLCCHPY VSGEKVAPDP EHLMRSRYCA FVMQDADYLI KTWHPSCGAA ALRAELMAGF
0071 AHTEWLGLTV FEHCWQDADN IGFVSFVARF TEGGKTGAII ERSRFLKENG QWYYIDGTRP QFGRNDPCPC
0141 GSGKKFKKCC GQ
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 attcccctgg aatgcaatcg tagccacatc
-070 gctactgctc ggttaacata gtgctactca ggcggttaat acgccgttat tgtttccagg gagattattt
0001 gtgtctcagc tttgtccctg tggtagtgct gtcgagtata gcctatgttg ccacccttat gtgtctggtg
0071 aaaaggttgc acctgatcca gaacatctca tgcgttcgcg ttactgcgct tttgtgatgc aagacgcaga
0141 ttatttaata aagacctggc atccctcttg tggagcagcg gcgttacgtg ccgaattgat ggccggattt
0211 gcgcatactg aatggttggg attgaccgta tttgaacatt gttggcagga cgccgacaat atcggatttg
0281 tcagttttgt tgctcgattt accgaaggtg gtaaaacagg tgcaataatt gaacgttcgc gatttttgaa
0351 agaaaacggt caatggtact atattgacgg tacacgtccg cagtttggtc gcaacgatcc ctgcccttgt
0421 ggttcaggta aaaaatttaa aaagtgctgc ggccaataat ggttgacggt acggtttagc aaacactctc
0491 aacaaggttt ttccagcaat gcattcactc caacgtaaag ttctgcgtac tatttgtccg gaccaaaaa
|
