|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
Escherichia coli and Salmonella, Cellular and Molecular Biology Second Edition. ASM Press. 1996
Neidhart, F.C.
|
|
|
Deletion
|
OCR67
(D)
,
OCR67-2
(D)
,
OCR67-5
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
chaB
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
chaB
Search strains by all related name:
chaB b1217 ECK1211 JW1208
|
General information (Go to Linear View: )
|
|
Gene Name
|
chaB
|
|
Alternative name
|
b1217,ECK1211,JW1208
|
|
Location, Length
|
1,271,342 - 1,271,572
(
+
)
;
27.40
min
;
231
(bp) ,
76
(aa)
|
|
Product
|
cation transport regulator
|
|
Operon Name
|
chaBC
|
|
Note
|
GO_component: GO:0005737 - cytoplasm; GO_process: GO:0006350 - transcription
|
|
Function
|
regulator; Transport of small molecules: Cations
|
|
Gene Ontology
|
GO:0006350
;
transcription ( chaB )
GO:0006355
;
regulation of transcription, DNA-dependent ( chaB )
|
|
PID
|
1787469
|
EC number
(KEGG Pathway)
|
|
|
SWISS-PROT
(
Show details
)
|
Entry name(Acc.no)
|
CHAB_ECOLI
(
P39162
)
|
|
- Protein name
|
Cation transport regulator chaB.
|
|
- Synonyms
|
|
|
- Gene name
|
OrderedLocusNames=b1217, c1677, z1992, ECs1722, SF1220, S1304;
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
chaB
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
Chain A, Nmr Solution Structure Of The Putative Cation Transport Regulator Chab
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
Cation transport regulator chaB
|
|
PSI-BLAST
|
Cation transport regulator chaB
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
cation transport regulator [Escherichia coli O157:H7 EDL933]
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
|
|
MMBR References
|
Personal communication.
Wu, H. C., and K. Rudd.
|
| Sequences |
Amino acid
FASTA format
|
0001 MPYKTKSDLP ESVKHVLPSH AQDIYKEAFN SAWDQYKDKE DRRDDASREE TAHKVAWAAV KHEYAKGDDD
0071 KWHKKS
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 GCGTCTCTTA AGAAGAGTCT GACCTGAAAA
-070 TTCTTATGTT TTGGCAAGAG TAGATATTGT TGACCACACT TAATGTTCAA CTTTGTAAAA GGAGTCAACG
0001 atgccgtata aaacgaaaag cgatctgccg gaaagcgtaa agcacgttct accgtctcat gcccaggata
0071 tctataaaga agcgttcaac agcgcatggg atcaatataa agataaagaa gatcggcgtg atgacgccag
0141 tcgcgaagaa accgcgcata aagtggcctg ggctgctgtg aagcatgaat atgccaaagg ggatgatgat
0211 aaatggcata aaaaatcgta aAACCGGTCG CTTAGTTAAA GCTATTCGTG CGGTGTTGCC TTGCAAGTGG
0281 TCCGTGGATT GCATATTGTC CCGTTAGTGG TTTCAAAATG AGCAGTAAAA A
|
