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PEC Original Annotations
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Essentiality
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|
Class
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non-essential
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References (PMID)
|
|
|
Deletion
|
OCR66
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
ldcA
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
ldcA
Search strains by all related name:
ldcA b1192 ECK1180 f304 f304b JW1181 ycgQ
|
General information (Go to Linear View: )
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|
Gene Name
|
ldcA
|
|
Alternative name
|
b1192,ECK1180,f304,f304b,JW1181,ycgQ
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|
Location, Length
|
1,241,389 - 1,242,303
(
-
)
;
26.76
min
;
915
(bp) ,
304
(aa)
|
|
Product
|
murein tetrapeptide carboxypeptidase; LD-carboxypeptidase A
|
|
Operon Name
|
ldcA
|
|
Note
|
GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0005737 - cytoplasm; GO_process: GO:0000270 - peptidoglycan metabolic process
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Function
|
enzyme; Murein sacculus, peptidoglycan
|
|
Gene Ontology
|
GO:0004180
;
carboxypeptidase activity ( ldcA )
GO:0005737
;
cytoplasm ( ldcA )
GO:0007047
;
cell wall organization and biogenesis ( ldcA )
GO:0008233
;
peptidase activity ( ldcA )
GO:0008360
;
regulation of cell shape ( ldcA )
GO:0009252
;
peptidoglycan biosynthetic process ( ldcA )
GO:0016787
;
hydrolase activity ( ldcA )
|
|
PID
|
1787441
|
EC number
(KEGG Pathway)
|
3.4.17.13
|
|
SWISS-PROT
(
Show details
[
2
more]
)
|
Entry name(Acc.no)
|
LDCA_ECOL6
(
P59238
)
|
|
- Protein name
|
Muramoyltetrapeptide carboxypeptidase
|
|
- Synonyms
|
EC 3.4.17.13, LD- carboxypeptidase A
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- Gene name
|
Name=ldcA; OrderedLocusNames=c1641;
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Homology Analysis
|
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BLAST
|
|
Bacteria
|
|
GTOP
|
ldcA
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
Chain A, Wild-Type Ld-Carboxypeptidase
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
Muramoyltetrapeptide carboxypeptidase
|
|
PSI-BLAST
|
Muramoyltetrapeptide carboxypeptidase
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
L,D-carboxypeptidase A [Escherichia coli K12]
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
ASN_GLYCOSYLATION
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
MYRISTYL
|
| Sequences |
Amino acid
FASTA format
|
0001 MSLFHLIAPS GYCIKQHAAL RGIQRLTDAG HQVNNVEVIA RRCERFAGTE TERLEDLNSL ARLTTPNTIV
0071 LAVRGGYGAS RLLADIDWQA LVARQQHDPL LICGHSDFTA IQCGLLAHGN VITFSGPMLV ANFGADELNA
0141 FTEHHFWLAL RNETFTIEWQ GEGPTCRAEG TLWGGNLAML ISLIGTPWMP KIENGILVLE DINEHPFRVE
0211 RMLLQLYHAG ILPRQKAIIL GSFSGSTPND YDAGYNLESV YAFLRSRLSI PLITGLDFGH EQRTVTLPLG
0281 AHAILNNTRE GTQLTISGHP VLKM
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 cttcttctat ccttatagcc tggaatcgcc
-070 gttgaggtga caacggcaca cctaagcggc atgatataca tttcgtttct gttgtcagca aggaattgcc
0001 atgtctctgt ttcacttaat tgccccatcg ggttactgca ttaaacagca cgccgcgctg cgtggtatcc
0071 agcgccttac cgacgcgggg catcaagtca ataacgtcga ggttattgcc cgtcgttgtg agcgttttgc
0141 gggtacggaa acagagcgtc tggaagatct caattccctt gccagactga ctacccccaa caccatcgtg
0211 ctggctgtac gcggcggtta cggtgccagt cgtttactgg cagatattga ctggcaggca ctggtggctc
0281 gccaacaaca tgacccgttg ctcatttgcg gacatagcga ttttaccgcc attcagtgcg gtcttctggc
0351 gcatggcaat gtcatcacct ttagcggccc catgctggta gcaaactttg gcgcggatga actgaacgcc
0421 tttaccgagc accatttctg gctggcgtta cgcaatgaaa ccttcaccat tgaatggcaa ggggaaggcc
0491 cgacatgtcg ggccgaaggc acgttgtggg gaggcaatct tgcgatgctg atttcactga tcggtacacc
0561 gtggatgcca aaaattgaga acggtattct ggtgctggaa gatattaacg agcacccttt ccgggtcgaa
0631 cgtatgctgt tgcagctcta tcatgcggga attttgccac gtcagaaggc gattattctc ggtagcttta
0701 gcggcagcac gcccaatgat tatgacgcag gttacaacct ggagtcagtg tacgcgtttt tgcgttcccg
0771 cctgtcgatt ccactcatta ccggcctcga ttttggtcat gaacaacgca cggttacgct gccgttgggc
0841 gcacatgcca ttctgaataa cacccgggaa ggcactcagt tgacgattag cggtcatcct gttcttaaaa
0911 tgtaaaaaaa tcacgcttca gggctaagta aaacgctgtc tctgccgcta atatggtagg gtttatataa
0981 gagacagcgt aatcaggagt aaccgaccgt tggat
|
