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PEC Original Annotations
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Essentiality
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Class
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non-essential
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References (PMID)
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Deletion
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OCR64
(D)
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Related gene (W3110 PEC)
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Gene Search
|
Search MG1655 PEC by gene name:
bluF
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Related strains
|
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Strains Search
|
Search strains by gene name:
bluF
Search strains by all related name:
bluF b1163 ECK1150 f403 JW1150 ycgF
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General information (Go to Linear View: )
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Gene Name
|
bluF
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Alternative name
|
b1163,ECK1150,f403,JW1150,ycgF
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Location, Length
|
1,213,487 - 1,214,698
(
-
)
;
26.15
min
;
1212
(bp) ,
403
(aa)
|
|
Product
|
anti-repressor for YcgE, blue light-responsive; FAD-binding; has c-di-GMP phosphodiesterase-like EAL domain, but does not degrade c-di-GMP
|
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Operon Name
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ycgF
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Note
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Function
|
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Gene Ontology
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PID
|
1787410
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EC number
(KEGG Pathway)
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SWISS-PROT
(
Show details
)
|
Entry name(Acc.no)
|
YCGF_ECOLI
(
P75990
)
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|
- Protein name
|
Hypothetical protein ycgF.
|
|
- Synonyms
|
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- Gene name
|
Name=ycgF; OrderedLocusNames=b1163;
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Homology Analysis
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BLAST
|
|
Bacteria
|
|
GTOP
|
ycgF
(
homologous genes of other bacterias
)
|
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PDB
(database updated :
2007.02.20
)
|
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PSI-BLAST
|
Chain A, Structure Of A Novel Photoreceptor: The Bluf Domain Of Appa From Rhodobacter Sphaeroides
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
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BLAST
|
Hypothetical protein ycgF
|
|
PSI-BLAST
|
Hypothetical protein ycgF
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
predicted FAD-binding phosphodiesterase [Escherichia coli K12]
|
|
Pfam 28.0
(database updated :
2015-05
)
|
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Pfam
|
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PROSITE
|
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PROSITE
|
ASN_GLYCOSYLATION
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
MYRISTYL
|
| Sequences |
Amino acid
FASTA format
|
0001 MLTTLIYRSH IRDDEPVKKI EEMVSIANRR NMQSDVTGIL LFNGSHFFQL LEGPEEQVKM IYRAICQDPR
0071 HYNIVELLCD YAPARRFGKA GMELFDLRLH ERDDVLQAVF DKGTSKFQLT YDDRALQFFR TFVLATEQST
0141 YFEIPAEDSW LFIADGSDKE LDSCALSPTI NDHFAFHPIV DPLSRRIIAF EAIVQKNEDS PSAIAVGQRK
0211 DGEIYTADLK SKALAFTMAH ALELGDKMIS INLLPMTLVN EPDAVSFLLN EIKANALVPE QIIVEFTESE
0281 VISRFDEFAE AIKSLKAAGI SVAIDHFGAG FAGLLLLSRF QPDRIKISQE LITNVHKSGP RQAIIQAIIK
0351 CCTSLEIQVS AMGVATPEEW MWLESAGIEM FQGDLFAKAK LNGIPSIAWP EKK
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 aatgtaaaga aacggttatg ttttggtatt
-070 aaaagaaaga cacaagaaga tatgtctgtt accgtcttac tctcgcctca cccattaccc tggattgtta
0001 atgcttacca cccttattta tcgtagccat atacgtgacg acgaacctgt caaaaaaatc gaagaaatgg
0071 tttcgatagc aaatcgcagg aacatgcagt ctgacgtaac agggatctta ctgtttaatg gttctcattt
0141 tttccagctt ctggaaggtc cggaagaaca ggttaaaatg atatatcggg ctatatgcca ggatccacgg
0211 cactataata ttgttgagct gctgtgcgat tacgcgcctg ctcgccgttt tggcaaagcg ggaatggaat
0281 tatttgattt gcgcctgcac gagcgagatg acgttttaca ggccgtattc gacaaaggca catcaaaatt
0351 tcagctaact tatgatgaca gagcgctaca attttttcgt acttttgtcc ttgcaaccga acaatcaacc
0421 tatttcgaga tccctgccga agactcctgg ctttttatcg ctgacggatc tgataaagaa cttgattcct
0491 gtgccctttc accaactata aacgaccact ttgcctttca tcctattgtc gatcccttat cgcggcggat
0561 aatcgctttt gaagccattg tgcaaaaaaa tgaagatagc ccatcagcca tagcggttgg gcagcgtaaa
0631 gacggggaaa tctacacagc ggatctcaaa agtaaggcgc ttgcattcac gatggcacac gcacttgagc
0701 tcggtgataa aatgatttca atcaatctat tacctatgac cctggttaac gaacctgacg cagtctcttt
0771 tttacttaat gaaataaagg ccaatgctct ggtgcctgaa caaatcatcg ttgaatttac tgaaagtgaa
0841 gtcatatctc ggtttgatga gtttgccgaa gcgattaaat cgctaaaggc tgctggtatc agtgtagcaa
0911 ttgatcattt tggcgcaggt tttgctggtt tgttactcct gtcacgcttc cagcctgaca gaattaaaat
0981 cagtcaggaa ttgattacca atgttcataa aagtgggcca cggcaggcaa ttattcaggc gatcataaaa
1051 tgctgtacat cacttgaaat tcaagtcagt gctatgggcg tggcaacacc agaagagtgg atgtggcttg
1121 aatccgcagg aattgagatg tttcagggag atctgtttgc taaagctaaa ttgaatggta tcccttccat
1191 agcgtggcca gagaaaaaat aattttcagc acattctttc acatgatttc agtaaatcat cgtgaaaatg
1261 aatacgttac gtttaaattt aatccacatt aaaaataatg tttcatccaa tt
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