|
PEC Original Annotations
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|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Deletion
|
ppdel-1
(LD)
,
OCR64
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
aaaE
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
aaaE
Search strains by all related name:
aaaE b1149 b4693 ECK1135 JW1135 ykgR ymfN
|
General information (Go to Linear View: )
|
|
Gene Name
|
aaaE
|
|
Alternative name
|
b1149,b4693,ECK1135,JW1135,ykgR,ymfN
|
|
Location, Length
|
1,203,627 - 1,204,760
(
+
)
;
25.94
min
;
1134
(bp) ,
377
(aa)
|
|
Product
|
|
|
Operon Name
|
ymfTLMNROPQ-ycfK-ymfS
|
|
Note
|
pseudogene, phage terminase protein A family, e14 prophage;Phage or Prophage Related
|
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Function
|
|
|
Gene Ontology
|
GO:0003700
;
transcription factor activity ( ymfN )
GO:0005622
;
intracellular ( ymfN )
GO:0006355
;
regulation of transcription, DNA-dependent ( ymfN )
|
|
PID
|
|
EC number
(KEGG Pathway)
|
|
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Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
ymfN
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
|
|
PSI-BLAST
|
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
|
| Sequences |
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 CATTGCCCGT CAGATTGGCG CGGGGATGAG
-070 TACCGTCAGA ACGGCTATCG CACGGCTGGA AGCAGAAGGC TGGTTAACGC GTAAGGCGCG TCGCCAGGGT
0001 gatggttcat caccccactg tgccgtggtg gatgaatatc acgagcacgc cacagatgcg ctttacacca
0071 cgatgcttac cgggatgggg gcgcgacgcc agccactgat gtgggccatt accaccgccg ggtacaacat
0141 tgaggggccg tgctacgaca aacggcggga agtcatcgag atgctcaacg gctcggtgcc aaacgatgaa
0211 ctgttcggga tcatctatac cgttgatgaa ggtgacgact ggaccgaccc gcaggtgctg gaaaaagcca
0281 atccaaatat tggcgtgtcg gtttatcgcg aatttttgtt aagtcagcag cagcgtgcga aaaataacgc
0351 ccgtctggca aacgtcttta aaacaaaaca cctcaatatc tgggcgtcgg cgcgttcggc gtatttcaac
0421 ctggtgagct ggcagagctg cgaggataaa tcactgaccc ttgagcagtt cgaggggcag ccgtgcattc
0491 tggcctttga cctggcgcgt aagctggata tgaacagcat ggcgcgactt tatacccgcg agattgacgg
0561 taaaacgcat tactacagtg tggccccgcg tttctgggta ccgtatgaca cggtgtacag cgtcgagaaa
0631 aatgaagatc gccggacagc cgaacgcttt cagaaatggg tggaaatggg cgttctgacc gttaccgatg
0701 gtgcggaggt ggattatcgc tacatcctcg aagaggccaa agcggcgaac aaaatcagcc cggtcagtga
0771 gtcacccatc gaccccttcg gggcgaccgg gctgtcacat gaccttgctg atgaagacct gaaccccgtc
0841 accatcattc agaactacac caacatgtcc gatccgatga aagagctgga agcggcgatt gaatcggggc
0911 gctttcatca tgacggcaat cccatcatga cctggtgtat cggcaacgtg gtcggcaaaa ccattccggg
0981 taacgatgat gtggtgaagc ccgtcaagga gcaggcggaa aacaaaatcg atggtgcagt tgcgctgatt
1051 atggcggttg gcagagccat gctgtacgag aaagaagaca cgctgtctga tcacattgag tcctacggga
1121 tccgctcgct ttaaCTGAGG TAATTATGAT CATGCTGATT CTCGCGCCTC TGGTGGGCGT GCTGGGTGCG
1191 CTTTTGCTGG CGTATGGTGC CTGGCTGATT TATCCCCCGG CGGG
|
