|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Deletion
|
9-1
(LD)
,
OCR36,37-6 (LD 9C::Ap)
(D)
,
OCR37
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
insD1
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
insD1
Search strains by all related name:
insD1 b0361 ECK0358 insD
|
General information (Go to Linear View: )
|
|
Gene Name
|
insD1
|
|
Alternative name
|
b0361,ECK0358,insD
|
|
Location, Length
|
380,898 - 381,803
(
+
)
;
8.21
min
;
906
(bp) ,
301
(aa)
|
|
Product
|
IS2 transposase TnpB
|
|
Operon Name
|
dicB-ydfDE-insD-intQ
|
|
Note
|
|
|
Function
|
IS, phage, Tn; Transposon-related functions; extrachromosomal; transposon related
|
|
Gene Ontology
|
GO:0003676
;
nucleic acid binding ( insD1 )
GO:0003677
;
DNA binding ( insD1 )
GO:0006310
;
DNA recombination ( insD1 )
GO:0006313
;
transposition, DNA-mediated ( insD1 )
GO:0015074
;
DNA integration ( insD1 )
|
|
PID
|
1786558
|
EC number
(KEGG Pathway)
|
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
|
|
PSI-BLAST
|
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
|
| Sequences |
Amino acid
FASTA format
|
0001 MDSARALIAR GWGVSLVSRC LRVSRAQLHV ILRRTDDWMD GRRSRHTDDT DVLLRIHHVI GELPTYGYRR
0071 VWALLRRQAE LDGMPAINAK RVYRIMRQNA LLLERKPAVP PSKRAHTGRV AVKESNQRWC SDGFEFCCDN
0141 GERLRVTFAL DCCDREALHW AVTTGGFNSE TVQDVMLGAV ERRFGNDLPS SPVEWLTDNG SCYRANETRQ
0211 FARMLGLEPK NTAVRSPESN GIAESFVKTI KRDYISIMPK PDGLTAAKNL AEAFEHYNEW HPHSALGYRS
0281 PREYLRQRAC NGLSDNRCLE I
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 CCGCCATGAA GCAGATTAAA GAACTCCAGC
-070 GCCTGCTCGG CAAGAAAACG ATGGAAAATG AACTCCTCAA AGAAGCCGTT GAATATGGAC GGGCAAAAAA
0001 gtggatagcg cacgcgccct tattgcccgg ggatggggag taagcttagt cagccgttgt ctccgggtgt
0071 cgcgtgcgca gttgcacgtc attctcagac gaaccgatga ctggatggat ggccgccgca gtcgtcacac
0141 tgatgatacg gatgtgcttc tccgtataca ccatgttatc ggagagctgc caacgtatgg ttatcgtcgg
0211 gtatgggcgc tgcttcgcag acaggcagaa cttgatggta tgcctgcgat caatgccaaa cgtgtttacc
0281 ggatcatgcg ccagaatgcg ctgttgcttg agcgaaaacc tgctgtaccg ccatcgaaac gggcacatac
0351 aggcagagtg gccgtgaaag aaagcaatca gcgatggtgc tctgacgggt tcgagttctg ctgtgataac
0421 ggagagagac tgcgtgtcac gttcgcgctg gactgctgtg atcgtgaggc actgcactgg gcggtcacta
0491 ccggcggctt caacagtgaa acagtacagg acgtcatgct gggagcggtg gaacgccgct tcggcaacga
0561 tcttccgtcg tctccagtgg agtggctgac ggataatggt tcatgctacc gggctaatga aacacgccag
0631 ttcgcccgga tgttgggact tgaaccgaag aacacggcgg tgcggagtcc ggagagtaac ggaatagcag
0701 agagcttcgt gaaaacgata aagcgtgact acatcagtat catgcccaaa ccagacgggt taacggcagc
0771 aaagaacctt gcagaggcgt tcgagcatta taacgaatgg catccgcata gtgcgctggg ttatcgctcg
0841 ccacgggaat atctgcggca gcgggcttgt aatgggttaa gtgataacag atgtctggaa atatagGGGC
0911 AAATCCAATT ACCTATCAGG CAGTTTGCGC CAATCACTAC CGGACCCTGA ATAACGGCAC CATGACAAAT
0981 ACGGGTATTC GCGCCGATAA CAACTT
|
