|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Deletion
|
OCR35
(D)
,
OCR35-5
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
rof
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
rof
Search strains by all related name:
rof b0189 ECK0188 JW0184 mesJ yaeO
|
General information (Go to Linear View: )
|
|
Gene Name
|
rof
|
|
Alternative name
|
b0189,ECK0188,JW0184,mesJ,yaeO
|
|
Location, Length
|
213,678 - 213,932
(
-
)
;
4.61
min
;
255
(bp) ,
84
(aa)
|
|
Product
|
modulator of Rho-dependent transcription termination
|
|
Operon Name
|
yaeP-rof
|
|
Note
|
GO_component: GO:0005737 - cytoplasm; GO_process: GO:0006350 - transcription
|
|
Function
|
|
|
Gene Ontology
|
|
|
PID
|
87081698
|
EC number
(KEGG Pathway)
|
|
|
Verified Protein Starts
(data
compiled from literature and appropriate citations are available from EcoGene)
|
|
EcoGene
|
rof
(
EG13221
)
|
|
Number of removed
|
0 aa cleaved
|
|
SWISS-PROT
(
Show details
[
3
more]
)
|
Entry name(Acc.no)
|
ROF_ECOLI
(
P52098
;
P75670; Q9WVU2
)
|
|
- Protein name
|
Rof protein.
|
|
- Synonyms
|
|
|
- Gene name
|
Name=rof; OrderedLocusNames=b0189, SF0179, S0182;
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
rof
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
Chain A, Solution Structure Of Yaeo, A Rho-Specific Inhibitor Of Transcription Termination
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
Protein rof
|
|
PSI-BLAST
|
Protein rof
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
hypothetical protein SBO_0177 [Shigella boydii Sb227]
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
ASN_GLYCOSYLATION
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
|
| Sequences |
Amino acid
FASTA format
|
0001 MNDTYQPINC DDYDNLELAC QHHLMLTLEL KDGEKLQAKA SDLVSRKNVE YLVVEAAGET RELRLDKITS
0071 FSHPEIGTVV VSES
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 aaagtgctga atgaaatggc tgccgacgac
-070 gccctttctg aggctgtcag ggaaaaagca gcatacgctg cggcaaactt actggtgagc gattatgtca
0001 atgaatgata cgtatcaacc aatcaattgt gatgattacg ataatcttga gctcgcctgc cagcatcatt
0071 taatgctgac acttgagctg aaagatggcg aaaaattgca ggcaaaagcc agtgatttag tctcccgcaa
0141 aaatgtggag tacctggtcg tcgaggccgc tggcgaaacc cgcgagctgc gtctggataa aattaccagc
0211 tttagccacc cggaaatcgg tacggtggtg gtaagcgaat cctgattgac tttcgccgga tgcgacgttt
0281 gatgcgtctt atccggcttt cacttaacta agcgttttct gccagacaaa acttacgcca ttctcacctt
0351 cagcc
|
