|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
Gene. 1995;153(1):93-8.
Identification of a chromosomally encoded ABC-transport system with which the staphylococcal erythromycin exporter MsrA may interact.
Ross JI, Eady EA, Cove JH, Baumberg S.
(
7883194
)
|
|
|
Deletion
|
OCL51
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
smpB
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
smpB
Search strains by all related name:
smpB b2620 ECK2616 JW2601 smqB
|
General information (Go to Linear View: )
|
|
Gene Name
|
smpB
|
|
Alternative name
|
b2620,ECK2616,JW2601,smqB
|
|
Location, Length
|
2,752,918 - 2,753,400
(
+
)
;
59.33
min
;
483
(bp) ,
160
(aa)
|
|
Product
|
trans-translation protein
|
|
Operon Name
|
smpB
|
|
Note
|
small protein B
|
|
Function
|
|
|
Gene Ontology
|
GO:0003723
;
RNA binding ( smpB )
GO:0005737
;
cytoplasm ( smpB )
GO:0006412
;
translation ( smpB )
|
|
PID
|
1788973
|
EC number
(KEGG Pathway)
|
|
|
Verified Protein Starts
(data
compiled from literature and appropriate citations are available from EcoGene)
|
|
EcoGene
|
smpB
(
EG11782
)
|
|
Number of removed
|
1 aa cleaved
|
|
SWISS-PROT
(
Show details
)
|
Entry name(Acc.no)
|
SSRP_ECOLI
(
P32052
;
P77011
)
|
|
- Protein name
|
SsrA-binding protein
|
|
- Synonyms
|
Small protein B
|
|
- Gene name
|
OrderedLocusNames=b2620, c3142, z3913, ECs3482, SF2679, S2857;
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
smpB
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
Chain A, Crystal Structure Of The Trna Domain Of Transfer-Messenger Rna In Complex With Smpb
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
SsrA-binding protein (Small protein B)
|
|
PSI-BLAST
|
SsrA-binding protein (Small protein B)
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
SsrA-binding protein [Escherichia coli O157:H7 str. Sakai]
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
ASN_GLYCOSYLATION
PKC_PHOSPHO_SITE
TYR_PHOSPHO_SITE
MYRISTYL
AMIDATION
SMPB
|
| Sequences |
Amino acid
FASTA format
|
0001 MTKKKAHKPG SATIALNKRA RHEYFIEEEF EAGLALQGWE VKSLRAGKAN ISDSYVLLRD GEAFLFGANI
0071 TPMAVASTHV VCDPTRTRKL LLNQRELDSL YGRVNREGYT VVALSLYWKN AWCKVKIGVA KGKKQHDKRS
0141 DIKEREWQVD KARIMKNAHR
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 CGCTGGGTAA CATCGGGTTC ATGCTAAGAT
-070 AGAGCCTTGT CCCCCGCAGG ATTGATATGG GGTGTTTTCG ATTTCAGATT ACCGATGATT CACGACGCTT
0001 atgacgaaga aaaaagcaca taaacctggt tcagcgacca tcgcgcttaa caagcgcgcc cgtcacgaat
0071 actttatcga agaagagttc gaagcgggac ttgccctgca aggctgggaa gttaaatccc tgcgcgcagg
0141 aaaagccaat atcagcgaca gctacgtcct tctgcgtgac ggagaggcat ttctgtttgg cgctaacatc
0211 acgccaatgg ccgtggcctc cacgcatgtg gtgtgcgatc ctacccgtac ccgcaagtta cttctcaacc
0281 agcgcgaact ggactcattg tacggtcgcg tcaatcgaga aggctatacc gtagtggcgc tctccctgta
0351 ctggaaaaat gcctggtgca aagtgaaaat cggcgtcgcc aaaggtaaga aacagcacga taaacgttca
0421 gatatcaaag agcgcgaatg gcaggtggat aaagcacgta tcatgaaaaa cgcccaccgt taaACCTGCA
0491 CTCCAATTAT TGACCAGTTC CTCACCGCGC CTCCCTCTCC GGCGGCGCGA ATGAACATCT TATTGGCTAT
0561 CACATCCGAC ACAAATGTTG CCA
|
