|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Deletion
|
OCR69,70-1
(D)
,
OCR69-2
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
gmr
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
gmr
Search strains by all related name:
gmr b1285 ECK1280 f661 JW1278 yciR
|
General information (Go to Linear View: )
|
|
Gene Name
|
gmr
|
|
Alternative name
|
b1285,ECK1280,f661,JW1278,yciR
|
|
Location, Length
|
1,342,781 - 1,344,766
(
-
)
;
28.94
min
;
1986
(bp) ,
661
(aa)
|
|
Product
|
cyclic-di-GMP phosphodiesterase; csgD regulator; modulator of Rnase II stability
|
|
Operon Name
|
gmr
|
|
Note
|
|
|
Function
|
|
|
Gene Ontology
|
GO:0004871
;
signal transducer activity ( gmr )
GO:0006355
;
regulation of transcription, DNA-dependent ( gmr )
GO:0007165
;
signal transduction ( gmr )
|
|
PID
|
1787541
|
EC number
(KEGG Pathway)
|
|
|
SWISS-PROT
(
Show details
[
3
more]
)
|
Entry name(Acc.no)
|
YHJK_ECOLI
(
P37649
)
|
|
- Protein name
|
Protein yhjK.
|
|
- Synonyms
|
|
|
- Gene name
|
Name=yhjK; OrderedLocusNames=b3529;
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
gmr
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
Chain A, Response Regulator Pled In Complex With C-Digmp
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
Hypothetical protein yciR
|
|
PSI-BLAST
|
Hypothetical protein yciR
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
modulator of Rnase II stability [Escherichia coli K12]
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
ASN_GLYCOSYLATION
GLYCOSAMINOGLYCAN
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
TYR_PHOSPHO_SITE
MYRISTYL
AMIDATION
|
| Sequences |
Amino acid
FASTA format
|
0001 MKTVRESTTL YNFLGSHNPY WRLTESSDVL RFSTTETTEP DRTLQLSAEQ AARIREMTVI TSSLMMSLTV
0071 DESDLSVHLV GRKINKREWA GNASAWHDTP AVARDLSHGL SFAEQVVSEA HSAIVILDSR GNIQRFNRLC
0141 EDYTGLKEHD VIGQSVFKLF MSRREAAASR RNNRVFFRSG NAYEVELWIP TCKGQRLFLF RNKFVHSGSG
0211 KNEIFLICSG TDITEERRAQ ERLRILANTD SITGLPNRNA MQDLIDHAIN HADNNKVGVV YLDLDNFKKV
0281 NDAYGHLFGD QLLRDVSLAI LSCLEHDQVL ARPGGDEFLV LASNTSQSAL EAMASRILTR LRLPFRIGLI
0351 EVYTSCSVGI ALSPEHGSDS TAIIRHADTA MYTAKEGGRG QFCVFTPEMN QRVFEYLWLD TNLRKALEND
0421 QLVIHYQPKI TWRGEVRSLE ALVRWQSPER GLIPPLDFIS YAEESGLIVP LGRWVILDVV RQVAKWRDKG
0491 INLRVAVNIS ARQLADQTIF TALKQVLQEL NFEYCPIDVE LTESCLIEND ELALSVIQQF SQLGAQVHLD
0561 DFGTGYSSLS QLARFPIDAI KLDQVFVRDI HKQPVSQSLV RAIVAVAQAL NLQVIAEGVE SAKEDAFLTK
0631 NGINERQGFL FAKPMPAVAF ERWYKRYLKR A
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 ataaaaaaaa caatgcgttt agccgccgtt
-070 aatttcatgt aagtcatgtt gttcctttta tttaaccgcg gactccgctg ttaaccggag gatatgcatc
0001 atgaaaaccg ttagggagtc cacaacgttg tacaactttc tcggatcgca caatccatac tggcggttga
0071 cggaaagcag cgatgttttg cgcttttcta ccaccgaaac cacagaacct gatcgtacat tgcagttatc
0141 tgccgaacag gctgctcgca tcagggaaat gacggtcatc acctccagcc tgatgatgag tctgaccgtc
0211 gatgaaagcg atctttctgt gcatctggta ggacgaaaaa tcaataaacg ggaatgggct ggcaacgcgt
0281 ctgcatggca tgacacaccg gcggttgctc gtgatttatc acacgggctt tcctttgctg agcaggtagt
0351 ttctgaagca cattccgcaa tagtgattct cgacagccgg gggaatatcc aacgcttcaa tcggttatgt
0421 gaagattaca cagggttgaa agaacacgac gtcattgggc aaagcgtgtt taaactgttt atgagccgtc
0491 gtgaagctgc ggcatccagg cgcaataacc gtgtattttt tcgaagcggc aatgcatatg aagtcgaact
0561 gtggatacca acatgtaaag gccagcggct gtttctgttt cgcaataaat ttgtccacag cggcagtggc
0631 aaaaacgaga tttttttaat ctgttccggc accgacatta ccgaagagcg ccgcgctcag gagcgactgc
0701 gtattctggc aaataccgac agtatcaccg gactgccgaa tcgtaacgca atgcaggatt taatcgatca
0771 cgctattaat catgcagata acaataaagt tggggttgtg tatcttgatt tggataattt caaaaaggtc
0841 aacgacgcct atgggcattt gtttggtgac cagttattac gcgacgtgtc attggctatt ttaagctgtc
0911 tcgaacatga ccaggtgttg gcgcgtccag gtggggatga gtttctggta ctggcatcca acacctcaca
0981 aagcgcgctg gaagcaatgg catcacgaat tttgacccgc ttacggctcc cctttcgcat tggtttaatt
1051 gaagtttata ccagctgttc agtaggtatt gcactctctc ccgaacatgg ttcagacagc acggctatta
1121 ttcgtcacgc cgacacagca atgtacacag cgaaggaagg cggacgagga caattttgcg tttttacccc
1191 agaaatgaat caacgggtat ttgaatatct ctggctggat accaacttgc gtaaagcact ggaaaacgat
1261 cagttggtta ttcactatca accgaaaatc acctggcgtg gcgaagtgcg cagtctggaa gcactagtac
1331 gttggcagtc acctgaacgt gggttgattc caccgttgga cttcatttcc tacgccgaag agtcagggct
1401 aattgtgcct ttaggccgtt gggtgattct cgatgtcgta cgccaggtgg caaagtggcg ggataaaggc
1471 ataaacctgc gagtggcggt aaatatttct gcacgtcagc tcgccgatca aaccattttc accgccctga
1541 aacaggttct ccaggaactc aattttgaat actgccctat agatgttgaa ctgacagaga gttgtctgat
1611 tgagaatgat gaactggcac tgtctgttat tcaacaattt agccaactag gtgcgcaagt gcatctggat
1681 gattttggta ccggctactc ttcactttcg caactggcgc gctttccgat cgatgccatc aaacttgacc
1751 aggtttttgt tcgagatatt cacaaacaac ctgtctcgca gtcactggtc cgggcgatcg tcgctgtggc
1821 ccaggcattg aatcttcagg tgatcgccga aggtgtagag agtgcaaagg aagatgcttt tttaaccaag
1891 aacgggatca atgagcggca aggatttttg tttgccaaac cgatgcccgc cgtcgccttc gaacgctggt
1961 ataaacgcta tctgaagcgc gcataagtag atgaatatat atacttagcg ctatatcccg tcattatata
2031 tcgtattcct ggatgataat tagccgttgc tgttaaacac ttctctttta gcggca
|
