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PEC Original Annotations
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Essentiality
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Class
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non-essential
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References (PMID)
|
J Basic Microbiol. 1995;35(4):217-27.
The fix Escherichia coli region contains four genes related to carnitine metabolism.
Eichler K, Buchet A, Bourgis F, Kleber HP, Mandrand-Berthelot MA.
(
7473063
)
|
|
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Deletion
|
OCR28
(D)
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Related gene (W3110 PEC)
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|
Gene Search
|
Search MG1655 PEC by gene name:
fixA
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Related strains
|
|
Strains Search
|
Search strains by gene name:
fixA
Search strains by all related name:
fixA b0041 ECK0042 JW0040 yaaQ
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General information (Go to Linear View: )
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Gene Name
|
fixA
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Alternative name
|
b0041,ECK0042,JW0040,yaaQ
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Location, Length
|
42,403 - 43,173
(
+
)
;
0.91
min
;
771
(bp) ,
256
(aa)
|
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Product
|
putative electron transfer flavoprotein subunit, required for anaerobic carnitine reduction
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Operon Name
|
fixABCX
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Note
|
probable flavoprotein subunit, carnitine metabolism; GO_process: GO:0016052 - carbohydrate catabolic process
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Function
|
putative enzyme; Energy metabolism, carbon: Electron transport
|
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Gene Ontology
|
GO:0006118
;
electron transport ( fixA )
GO:0006810
;
transport ( fixA )
GO:0009055
;
electron carrier activity ( fixA )
GO:0009437
;
carnitine metabolic process ( fixA )
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PID
|
87081682
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EC number
(KEGG Pathway)
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|
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SWISS-PROT
(
Show details
[
2
more]
)
|
Entry name(Acc.no)
|
FIXA_ECOLI
(
P60566
;
P31573; P75625; P76901; Q8XA29
)
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- Protein name
|
FixA protein.
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- Synonyms
|
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- Gene name
|
Name=fixA; OrderedLocusNames=b0041;
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Homology Analysis
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BLAST
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|
Bacteria
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|
GTOP
|
fixA
(
homologous genes of other bacterias
)
|
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PDB
(database updated :
2007.02.20
)
|
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PSI-BLAST
|
Chain C, Ternary Complex Between Trimethylamine Dehydrogenase And Electron Transferring Flavoprotein
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SWISS-PROT
(database updated :
2007.02.20
)
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BLAST
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Protein fixA
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PSI-BLAST
|
Protein fixA
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nr
(database updated :
2007.02.20
)
|
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BLAST
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putative electron transfer flavoprotein subunit beta [Escherichia coli CFT073]
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Pfam 28.0
(database updated :
2015-05
)
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Pfam
|
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PROSITE
|
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PROSITE
|
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
MYRISTYL
AMIDATION
ETF_BETA
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MMBR References
|
J Basic Microbiol. 1995;35(4):217-27.
The fix Escherichia coli region contains four genes related to carnitine metabolism.
Eichler K, Buchet A, Bourgis F, Kleber HP, Mandrand-Berthelot MA.
(
7473063
)
|
J Bacteriol. 1998;180:2599-2608
Regulation of the carnitine pathway in Escherichia coli: investigation of the cai-fix divergent promoter region.
Buchet, A., K. Eichler, and M. A. Mandrand-Berthelot.
|
| Sequences |
Amino acid
FASTA format
|
0001 MKIITCYKCV PDEQDIAVNN ADGSLDFSKA DAKISQYDLN AIEAACQLKQ QAAEAQVTAL SVGGKALTNA
0071 KGRKDVLSRG PDELIVVIDD QFEQALPQQT ASALAAAAQK AGFDLILCGD GSSDLYAQQV GLLVGEILNI
0141 PAVNGVSKII SLTADTLTVE RELEDETETL SIPLPAVVAV STDINSPQIP SMKAILGAAK KPVQVWSAAD
0211 IGFNAEAAWS EQQVAAPKQR ERQRIVIEGD GEEQIAAFAE NLRKVI
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 TATTGGTGAT TAAAGTTTTA TTTCAAAATT
-070 AAAGGGCGTG ATATCTGTAA TTAACACCAC CGATATGAAC GACGTTTCCT TCATGATTTC TGGAGATGCA
0001 atgaagatta ttacttgcta taagtgcgtg cctgatgaac aggatattgc ggtcaataat gctgatggtt
0071 cattagactt cagcaaagcc gatgccaaaa taagccaata cgatctcaac gctattgaag cggcttgcca
0141 gctaaagcaa caggcagcag aggcgcaggt gacagcctta agtgtgggcg gtaaagccct gaccaacgcc
0211 aaagggcgta aagatgtgct atcgcgcggc ccggatgaac tgattgtggt gattgatgac cagttcgagc
0281 aggcactgcc gcaacaaacg gcgagcgcac tggctgcagc cgcccagaaa gcaggctttg atctgatcct
0351 ctgtggcgat ggttcttccg acctttatgc ccagcaggtt ggtctgctgg tgggcgaaat cctcaatatt
0421 ccggcagtta acggcgtcag caaaattatc tccctgacgg cagataccct caccgttgag cgcgaactgg
0491 aagatgaaac cgaaacctta agcattccgc tgcctgcggt tgttgctgtt tccactgata tcaactcccc
0561 acaaattcct tcgatgaaag ccattctcgg cgcggcgaaa aagcccgtcc aggtatggtc ggcggcggat
0631 attggtttta acgcagaggc agcctggtca gaacaacagg ttgccgcgcc gaaacagcgc gaacgtcagc
0701 gcatcgtgat tgaaggcgac ggcgaagaac agatcgccgc atttgctgaa aatcttcgca aagtcattta
0771 aTTACAGGGG ATGCTATGAA CACGTTTTCT CAAGTCTGGG TATTCAGCGA TACCCCTTCT CGTCTGCCGG
0841 AACTGATGAA CGGTGCGCAG GCTTTAGCTA A
|
