|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Deletion
|
OCR27
(D)
,
OCR27-5
(D)
,
OCR27-8
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
insB1
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
insB1
Search strains by all related name:
insB1 b0021 ECK0022 insB
|
General information (Go to Linear View: )
|
|
Gene Name
|
insB1
|
|
Alternative name
|
b0021,ECK0022,insB
|
|
Location, Length
|
19,811 - 20,314
(
-
)
;
0.43
min
;
504
(bp) ,
167
(aa)
|
|
Product
|
IS1 transposase B
|
|
Operon Name
|
insAB-1A-1B-1
|
|
Note
|
|
|
Function
|
IS, phage, Tn; Transposon-related functions; extrachromosomal; transposon related
|
|
Gene Ontology
|
GO:0003677
;
DNA binding ( insB1 )
GO:0004803
;
transposase activity ( insB1 )
GO:0006310
;
DNA recombination ( insB1 )
GO:0006313
;
transposition, DNA-mediated ( insB1 )
|
|
PID
|
1786203
|
EC number
(KEGG Pathway)
|
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
|
|
PSI-BLAST
|
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
|
| Sequences |
Amino acid
FASTA format
|
0001 MPGNSPHYGR WPQHDFTSLK KLRPQSVTSR IQPGSDVIVC AEMDEQWGYV GAKSRQRWLF YAYDSLRKTV
0071 VAHVFGERTM ATLGRLMSLL SPFDVVIWMT DGWPLYESRL KGKLHVISKR YTQRIERHNL NLRQHLARLG
0141 RKSLSFSKSV ELHDKVIGHY LNIKHYQ
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 gctctcactg ccgtaaaaca tggcaactgc
-070 agttcactta caccgcttct caacccggta cgcaccagaa aatcattgat atggccatga atggcgttgg
0001 atgccgggca acagcccgca ttatgggcgt tggcctcaac acgattttac gtcacttaaa aaactcaggc
0071 cgcagtcggt aacctcgcgc atacagccgg gcagtgacgt catcgtctgc gcggaaatgg acgaacagtg
0141 gggctatgtc ggggctaaat cgcgccagcg ctggctgttt tacgcgtatg acagtctccg gaagacggtt
0211 gttgcgcacg tattcggtga acgcactatg gcgacgctgg ggcgtcttat gagcctgctg tcaccctttg
0281 acgtggtgat atggatgacg gatggctggc cgctgtatga atcccgcctg aagggaaagc tgcacgtaat
0351 cagcaagcga tatacgcagc gaattgagcg gcataacctg aatctgaggc agcacctggc acggctggga
0421 cggaagtcgc tgtcgttctc aaaatcggtg gagctgcatg acaaagtcat cgggcattat ctgaacataa
0491 aacactatca ataagttgga gtcattacca gcaattacta ctcttttcag catccccatg aaggaagtaa
0561 tcagattcct ctatttattc gcccgcgtac atatggaaac aatg
|
