|
PEC Original Annotations
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|
Essentiality
|
|
Class
|
non-essential
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References (PMID)
|
|
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Deletion
|
OCL61
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
alaC
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
alaC
Search strains by all related name:
alaC b2379 ECK2375 f412 f412a JW2376 yfdZ
|
General information (Go to Linear View: )
|
|
Gene Name
|
alaC
|
|
Alternative name
|
b2379,ECK2375,f412,f412a,JW2376,yfdZ
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|
Location, Length
|
2,495,079 - 2,496,317
(
-
)
;
53.78
min
;
1239
(bp) ,
412
(aa)
|
|
Product
|
valine-pyruvate aminotransferase 3
|
|
Operon Name
|
alaC
|
|
Note
|
putative aminotransferase
|
|
Function
|
enzyme; Amino acid biosynthesis: Alanine
|
|
Gene Ontology
|
GO:0003824
;
catalytic activity ( yfdZ )
GO:0005737
;
cytoplasm ( yfdZ )
GO:0008483
;
transaminase activity ( yfdZ )
GO:0009058
;
biosynthetic process ( yfdZ )
GO:0016740
;
transferase activity ( yfdZ )
GO:0016769
;
transferase activity, transferring nitrogenous groups ( yfdZ )
GO:0030170
;
pyridoxal phosphate binding ( yfdZ )
|
|
PID
|
1788722
|
EC number
(KEGG Pathway)
|
|
|
SWISS-PROT
(
Show details
)
|
Entry name(Acc.no)
|
YFDZ_ECOLI
(
P77434
)
|
|
- Protein name
|
Hypothetical aminotransferase yfdZ
|
|
- Synonyms
|
EC 2.6.1.-
|
|
- Gene name
|
Name=yfdZ; OrderedLocusNames=b2379;
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Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
yfdZ
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
Chain A, Crystal Structure Of Aromatic Aminotransferase From Pyrococcus Horikoshii Ot3
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
Hypothetical aminotransferase yfdZ
|
|
PSI-BLAST
|
Serine hydroxymethyltransferase
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
hypothetical protein b2379 [Escherichia coli K12]
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
ASN_GLYCOSYLATION
CAMP_PHOSPHO_SITE
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
MYRISTYL
|
| Sequences |
Amino acid
FASTA format
|
0001 MADTRPERRF TRIDRLPPYV FNITAELKMA ARRRGEDIID FSMGNPDGAT PPHIVEKLCT VAQRPDTHGY
0071 STSRGIPRLR RAISRWYQDR YDVEIDPESE AIVTIGSKEG LAHLMLATLD HGDTVLVPNP SYPIHIYGAV
0141 IAGAQVRSVP LVEGVDFFNE LERAIRESYP KPKMMILGFP SNPTAQCVEL EFFEKVVALA KRYDVLVVHD
0211 LAYADIVYDG WKAPSIMQVP GARDVAVEFF TLSKSYNMAG WRIGFMVGNK TLVSALARIK SYHDYGTFTP
0281 LQVAAIAALE GDQQCVRDIA EQYKRRRDVL VKGLHEAGWM VEMPKASMYV WAKIPEPYAA MGSLEFAKKL
0351 LNEAKVCVSP GIGFGDYGDT HVRFALIENR DRIRQAIRGI KAMFRADGLL PASSKHIHEN AE
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 cgctggacag acagaaatta atcaggctat
-070 tttcaaaaca gccaccatcg tggcagcgtc gctcggacgg tccgggcgct aacgttaatc tgaggaaatt
0001 atggctgaca ctcgccctga acgtcgcttt acgcgcattg atcgtctccc gccctacgtt tttaacatca
0071 ccgctgaact gaaaatggct gcgcgtcggc gcggcgaaga tattatcgat ttcagcatgg gtaacccgga
0141 cggtgcgact ccgccgcata tcgtcgaaaa attatgtact gtggcccagc gcccggacac gcatggttac
0211 tccacttcac gcggcattcc gcggttacgt cgcgccattt cccgctggta tcaggatcgc tacgacgttg
0281 aaatcgaccc ggaatcagaa gccatcgtca ctattggttc gaaagagggc ctggcgcatc tgatgctggc
0351 gacgctggat catggtgaca cggtgctggt gccgaatcca agttacccga tccatattta tggcgcggtg
0421 attgccgggg cgcaggtacg ctcagtgccg ctggtggaag gtgtcgattt cttcaacgaa ctggagcgag
0491 ccattcgtga aagttatccg aaaccgaaga tgatgatcct cggcttcccg tcaaacccaa ccgcgcaatg
0561 cgtggaactg gagttcttcg aaaaagtagt ggcgctggcg aaacgctacg atgtgctggt ggtccatgac
0631 ctggcctatg ccgatatcgt ctacgatggc tggaaagcgc cgtcaattat gcaggtaccg ggtgcacgcg
0701 atgtggcagt cgagttcttt acgctgtcga aaagctacaa catggcgggc tggcgtatcg gctttatggt
0771 tggcaacaaa acgctggtca gcgccctggc tcgtattaaa agctatcacg attacggcac ctttacgccg
0841 ttgcaggtgg cggcgattgc ggcgctggag ggcgatcaac agtgcgtgcg cgacattgcc gaacagtaca
0911 aacgccgccg tgatgtattg gttaaagggc tgcatgaagc gggctggatg gttgaaatgc cgaaggcttc
0981 gatgtatgtc tgggcgaaaa tcccggaacc atatgcggcc atgggatcgc tggaatttgc caagaagctc
1051 cttaacgaag cgaaggtttg tgtctcgccg gggattggct ttggcgacta tggtgatacg catgttcgct
1121 ttgcactgat tgaaaaccgc gaccgtattc gtcaggccat cagagggatt aaagcgatgt tccgtgccga
1191 cggtttacta cccgccagca gcaaacatat tcacgaaaac gcggaataaa caccgtcgtc agaaatgcaa
1261 acaggagcct gatggctcct gtttttcatt gcacagtttg cttttagatc atcagggcaa aagtaccggc
1331 ccaaacgat
|
