|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Deletion
|
LD3-17-1
(LD)
,
OCL85
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
astC
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
astC
Search strains by all related name:
astC argM b1748 cstC ECK1746 f406 f406b JW1737 ydjW
|
General information (Go to Linear View: )
|
|
Gene Name
|
astC
|
|
Alternative name
|
argM,b1748,cstC,ECK1746,f406,f406b,JW1737,ydjW
|
|
Location, Length
|
1,828,786 - 1,830,006
(
-
)
;
39.42
min
;
1221
(bp) ,
406
(aa)
|
|
Product
|
succinylornithine transaminase, PLP-dependent
|
|
Operon Name
|
astCADBE
|
|
Note
|
acetylornithine delta-aminotransferase; GO_process: GO:0009063 - cellular amino acid catabolic process
|
|
Function
|
enzyme; Amino acid biosynthesis: Arginine
|
|
Gene Ontology
|
GO:0003824
;
catalytic activity ( astC )
GO:0005515
;
protein binding ( astC )
GO:0006525
;
arginine metabolic process ( astC )
GO:0008483
;
transaminase activity ( astC )
GO:0016740
;
transferase activity ( astC )
GO:0019544
;
arginine catabolic process to glutamate ( astC )
GO:0030170
;
pyridoxal phosphate binding ( astC )
GO:0043825
;
succinylornithine transaminase activity ( astC )
|
|
PID
|
1788044
|
EC number
(KEGG Pathway)
|
2.6.1.11
2.6.1.17
|
|
SWISS-PROT
(
Show details
[
3
more]
)
|
Entry name(Acc.no)
|
ARGD_ECOLI
(
P18335
)
|
|
- Protein name
|
Acetylornithine/succinyldiaminopimelate aminotransferase
|
|
- Synonyms
|
EC 2.6.1.11, EC 2.6.1.17, ACOAT, Succinyldiaminopimelate transferase, DapATase
|
|
- Gene name
|
Name=argD; Synonyms=dapC, dtu; OrderedLocusNames=b3359;
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
astC
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
Chain A, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
Succinylornithine transaminase
|
|
PSI-BLAST
|
Acetylornithine aminotransferase
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
succinylornithine transaminase, PLP-dependent [Escherichia coli K12]
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
ASN_GLYCOSYLATION
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
TYR_PHOSPHO_SITE
MYRISTYL
AA_TRANSFER_CLASS_3
|
| Sequences |
Amino acid
FASTA format
|
0001 MSQPITRENF DEWMIPVYAP APFIPVRGEG SRLWDQQGKE YIDFAGGIAV NALGHAHPEL REALNEQASK
0071 FWHTGNGYTN EPVLRLAKKL IDATFADRVF FCNSGAEANE AALKLARKFA HDRYGSHKSG IVAFKNAFHG
0141 RTLFTVSAGG QPAYSQDFAP LPADIRHAAY NDINSASALI DDSTCAVIVE PIQGEGGVVP ASNAFLQGLR
0211 ELCNRHNALL IFDEVQTGVG RTGELYAYMH YGVTPDLLTT AKALGGGFPV GALLATEECA RVMTVGTHGT
0281 TYGGNPLASA VAGKVLELIN TPEMLNGVKQ RHDWFVERLN TINHRYGLFS EVRGLGLLIG CVLNADYAGQ
0351 AKQISQEAAK AGVMVLIAGG NVVRFAPALN VSEEEVTTGL DRFAAACEHF VSRGSS
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 tttatcactg gctggcacga accctgcaat
-070 ctacatttac agcgcaaaca ttacttatta ttaacatata aataacgaat tatttactgt agaggtcgct
0001 atgtctcagc caattacgcg tgaaaacttt gatgaatgga tgatacctgt ttacgctccg gcacccttta
0071 taccggtacg tggcgaaggt tcgcgcttgt gggatcagca ggggaaagag tatatcgact tcgcgggtgg
0141 cattgcggtg aacgcgctgg gccatgcgca tccggaactg cgtgaagcgc tgaacgaaca ggcgagtaag
0211 ttctggcata ccggcaacgg ttacaccaac gagccggtac tgcgactggc gaaaaaattg atcgacgcca
0281 cgtttgccga tcgcgtcttc ttttgtaact ccggtgcgga agccaacgaa gcggcgctaa aactggcgcg
0351 taaattcgct cacgaccgct acggcagcca taagagcggc atcgtggcgt tcaaaaatgc gtttcatggt
0421 cgcacgctgt ttactgtcag tgcgggtggg cagccagcct attcacagga ttttgcgcca ctgccggcgg
0491 atattcgtca tgctgcatat aacgatatta actctgccag cgcgctgatt gacgactcta cctgtgcggt
0561 gattgtcgaa cccatccagg gggaaggcgg tgtggtgcca gccagcaacg cgtttttaca aggtctgcgt
0631 gaattgtgta accgccacaa tgcgctgttg atttttgatg aagtacaaac cggcgtcggg cgcaccgggg
0701 aactgtatgc ctatatgcac tacggcgtga cgcctgatct gttaactacc gccaaagcgc tgggcggcgg
0771 tttcccggtc ggtgcgttgt tggcaaccga agagtgcgcc cgcgtgatga ccgttggcac tcatggcacc
0841 acctatggcg gtaatccgct ggcctcggcg gtggcaggca aagtgctgga gctcatcaac acaccagaga
0911 tgcttaatgg cgttaaacag cgtcacgact ggtttgttga gcgtcttaat actattaatc accgctatgg
0981 tttgttcagt gaagttcgcg gcttaggttt gctgattggc tgtgtactga atgccgatta cgccgggcaa
1051 gcgaaacaga tctctcagga agcggcgaaa gcaggcgtga tggtactgat tgcgggtggc aacgtggtgc
1121 gttttgcgcc tgcgctcaat gtcagcgaag aagaggtgac gaccggactg gatcgctttg cagctgcttg
1191 cgaacacttt gttagccgag gttcatcatg atggtcatcc gtcccgttga gcgatcagat gtctcggcgc
1261 tgatgcagct tgccagcaaa acgggcggcg gcctgacgtc gcttcccgcc aatgaagcca c
|
