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PEC Original Annotations
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Essentiality
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Class
|
essential
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|
References (PMID)
|
Escherichia coli and Salmonella, Cellular and Molecular Biology Second Edition. ASM Press. 1996
Neidhart, F.C.
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|
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Deletion
|
OCR46-11
(D)
|
|
Related gene (W3110 PEC)
|
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Gene Search
|
Search MG1655 PEC by gene name:
lptE
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Related strains
|
|
Strains Search
|
Search strains by gene name:
lptE
Search strains by all related name:
lptE b0641 ECK0634 JW0636 rlpB
|
General information (Go to Linear View: )
|
|
Gene Name
|
lptE
|
|
Alternative name
|
b0641,ECK0634,JW0636,rlpB
|
|
Location, Length
|
670,828 - 671,409
(
-
)
;
14.46
min
;
582
(bp) ,
193
(aa)
|
|
Product
|
LPS assembly OM complex LptDE, lipoprotein component
|
|
Operon Name
|
leuS-lptE-holA-nadD-cobC
|
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Note
|
a minor lipoprotein; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0042158 - lipoprotein biosynthetic process
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Function
|
membrane; Macromolecule synthesis, modification: Lipoprotein
|
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Gene Ontology
|
GO:0005515
;
protein binding ( rlpB )
GO:0009279
;
cell outer membrane ( rlpB )
GO:0016020
;
membrane ( rlpB )
GO:0019867
;
outer membrane ( rlpB )
GO:0043165
;
outer membrane biogenesis (sensu Proteobacteria) ( rlpB )
|
|
PID
|
1786860
|
EC number
(KEGG Pathway)
|
|
|
SWISS-PROT
(
Show details
[
1
more]
)
|
Entry name(Acc.no)
|
RLPB_ECOLI
(
P10101
;
P77576
)
|
|
- Protein name
|
Rare lipoprotein B precursor.
|
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- Synonyms
|
|
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- Gene name
|
Name=rlpB; OrderedLocusNames=b0641, c0732;
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Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
rlpB
(
homologous genes of other bacterias
)
|
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PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
Rare lipoprotein B precursor
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PSI-BLAST
|
Rare lipoprotein B precursor
|
|
nr
(database updated :
2007.02.20
)
|
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BLAST
|
minor lipoprotein [Escherichia coli K12]
|
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Pfam 28.0
(database updated :
2015-05
)
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Pfam
|
|
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PROSITE
|
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PROSITE
|
ASN_GLYCOSYLATION
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
PROKAR_LIPOPROTEIN
|
|
MMBR References
|
J Bacteriol. 1987;169(12):5692-9.
Genes encoding two lipoproteins in the leuS-dacA region of the Escherichia coli chromosome.
Takase I, Ishino F, Wachi M, Kamata H, Doi M, Asoh S, Matsuzawa H, Ohta T, Matsuhashi M.
(
3316191
)
|
| Sequences |
Amino acid
FASTA format
|
0001 MRYLATLLLS LAVLITAGCG WHLRDTTQVP STMKVMILDS GDPNGPLSRA VRNQLRLNGV ELLDKETTRK
0071 DVPSLRLGKV SIAKDTASVF RNGQTAEYQM IMTVNATVLI PGRDIYPISA KVFRSFFDNP QMALAKDNEQ
0141 DMIVKEMYDR AAEQLIRKLP SIRAADIRSD EEQTSTTTDT PATPARVSTT LGN
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 atctggtagc aaaatatctt gatggcgtta
-070 ctgtacgtaa agtgatttac gtaccaggta aactcctcaa tctggtcgtt ggctaagcgc gggaggaagc
0001 gtgcgatatc tggcaacatt gttgttatct ctggcggtgt taatcaccgc cgggtgtggc tggcatctgc
0071 gtgataccac gcaggttcct tccactatga aggtcatgat cctggactca ggcgatccga acgggccatt
0141 aagccgtgcg gtgcgtaacc agttacgtct gaatggtgtc gagttgcttg ataaagaaac cacgcgtaag
0211 gacgttccat ccttgcgttt gggtaaagtg agcatcgcga aagataccgc atcggtattc cgtaacggtc
0281 aaacagcaga gtatcagatg atcatgacgg ttaatgcgac cgtgttgatc cccggccgtg atatctaccc
0351 gattagcgcc aaagtcttcc gttcgttctt cgataacccg caaatggcgt tagcgaaaga taacgaacaa
0421 gacatgatcg taaaagagat gtacgaccgt gctgccgaac agctgattcg taagctgcca agcatccgtg
0491 ctgcggatat tcgttccgac gaagaacaga cgtcgaccac aacggatact ccggcaacgc ctgcacgcgt
0561 ctccaccacg ctgggtaact gatgattcgg ttgtacccgg aacaactccg cgcgcagctc aatgaagggc
0631 tgcgcgcggc gtatctttta cttggtaacg atcctctgtt attgcaggaa ag
|
