|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Deletion
|
OCR62-1
(D)
,
OCR62-6
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
ycfP
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
ycfP
Search strains by all related name:
ycfP b1108 ECK1094 JW5158 o199 o199a
|
General information (Go to Linear View: )
|
|
Gene Name
|
ycfP
|
|
Alternative name
|
b1108,ECK1094,JW5158,o199,o199a
|
|
Location, Length
|
1,164,366 - 1,164,908
(
+
)
;
25.10
min
;
543
(bp) ,
180
(aa)
|
|
Product
|
hypothetical protein
|
|
Operon Name
|
hinT-ycfL-lpoB-thiK-nagZ-ycfP
|
|
Note
|
|
|
Function
|
|
|
Gene Ontology
|
|
|
PID
|
87081832
|
EC number
(KEGG Pathway)
|
|
|
SWISS-PROT
(
Show details
[
1
more]
)
|
Entry name(Acc.no)
|
YQIA_ECOLI
(
P36653
)
|
|
- Protein name
|
Hypothetical protein yqiA.
|
|
- Synonyms
|
|
|
- Gene name
|
OrderedLocusNames=b3031, c3777, z4388, ECs3919, SF3071, S3276;
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
ycfP
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
UPF0227 protein ycfP
|
|
PSI-BLAST
|
UPF0227 protein ycfP
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
hypothetical protein c1381 [Escherichia coli CFT073]
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
TYR_PHOSPHO_SITE
MYRISTYL
AMIDATION
|
| Sequences |
Amino acid
FASTA format
|
0001 MIIYLHGFDS NSPGNHEKVL QLQFIDPDVR LISYSTRHPK HDMQHLLKEV DKMLQLNVDE RPLICGVGLG
0071 GYWAERIGFL CDIRQVIFNP NLFPYENMEG KIDRPEEYAD IATKCVTNFR EKNRDRCLVI LSRNDEALNS
0141 QRTSEELHHY YEIVWDEEQT HKFKNISPHL QRIKAFKTLG
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 TCGGCTCGCT GGAAAGCGAT CAGCACCCGT
-070 CTGAATCAGT TACATGAACG CTGGCAGGAA GAGAAAGCAG GTCACTAACC CTGGCTTATG TGAGGAAGCG
0001 atgattatct atttacacgg ttttgactct aacagtccgg gtaaccacga gaaagtctta caattgcagt
0071 ttattgaccc ggatgtacgc ttgataagct acagtacgcg gcatccgaaa catgatatgc agcatctgct
0141 taaagaagtg gacaaaatgt tgcaactgaa cgttgacgag cgtccgctaa tttgcggcgt tggcttgggc
0211 ggatactggg cggaacggat tggttttctt tgcgacatcc gccaggtgat cttcaaccct aatttgttcc
0281 cttatgagaa catggaaggc aagattgatc gcccggaaga gtatgccgat attgccacta agtgtgtgac
0351 caacttccgt gagaagaatc gcgatcgttg cctggtgatt ttgtcgcgta atgatgaagc gcttaacagc
0421 cagcggacat ctgaagagtt gcatcattat tacgagattg tctgggacga agagcagacg cacaaattca
0491 agaatatctc cccgcattta cagcgcatta aagcgttcaa aaccctcggg taaATGCCCT CGTCGCATCA
0561 GGTAACCTTG CCGGTACCTG ATGCGCTCCG AATTCTGTGG GTCGGATAAG GCGTCCACGC CGCATCCGAC
0631 AGTCGAGCAT CAA
|
