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PEC Original Annotations
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Essentiality
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Class
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non-essential
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References (PMID)
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Deletion
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OCL23
(D)
,
OCL23-14
(D)
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Related gene (W3110 PEC)
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Gene Search
|
Search MG1655 PEC by gene name:
rrlD
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Related strains
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Strains Search
|
Search strains by gene name:
rrlD
Search strains by all related name:
rrlD b3275 ECK3262 JWR0076
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General information (Go to Linear View: )
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rRNA Name
|
rrlD
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Alternative name
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b3275,ECK3262,JWR0076
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Location, Length
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3,421,902 - 3,424,805
(
-
)
;
73.75
min
;
2904
(bp) ,
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Product
|
23S ribosomal RNA of rrnD operon
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Operon Name
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rrsD-ileU-alaU-rrlD-rrfD-thrV-rrfF
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Note
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Function
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Gene Ontology
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PID
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EC number
(KEGG Pathway)
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Homology Analysis
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BLAST
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Bacteria
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GTOP
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PDB
(database updated :
2007.02.20
)
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PSI-BLAST
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SWISS-PROT
(database updated :
2007.02.20
)
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BLAST
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PSI-BLAST
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nr
(database updated :
2007.02.20
)
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BLAST
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Pfam 28.0
(database updated :
2015-05
)
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Pfam
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PROSITE
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PROSITE
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MMBR References
|
Nucleic Acids Res. 1980;8:3793-3807
The distal end of the ribosomal RNA operon rrnD of Escherichia coli contains a tRNA1thr gene, two 5s rRNA genes and a transcription terminator.
Duester, G., and W. M. Holmes.
|
RNA 1996;2:1011-1021
In vitro complementation analysis localizes 23S rRNA posttranscriptional modifications that are required for Escherichia coli 50S ribosomal subunit assembly and function.
Green, R., and H. F. Noller.
|
J Mol Biol. 1995;254(5):838-47.
The involvement of two distinct regions of 23 S ribosomal RNA in tRNA selection.
O'Connor M, Dahlberg AE.
(
7500354
)
|
Proc Natl Acad Sci U S A. 1996;93:5641-5646
A functional peptide encoded in the Escherichia coli 23S rRNA.
Tenson, T., A. DeBlasio, and A. Mankin.
|
J Mol Biol. 1996;259(1):1-6.
Mutations in domain II of 23 S rRNA facilitate translation of a 23 S rRNA-encoded pentapeptide conferring erythromycin resistance.
Dam M, Douthwaite S, Tenson T, Mankin AS.
(
8648637
)
|
| Sequences |
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 aatctggatc aagctgaaaa ttgaaacact
-070 gaacaacgaa agttgttcgt gagtctctca aattttcgca actctgaagt gaaacatctt cgggttgtga
0001 ggttaagcga ctaagcgtac acggtggatg ccctggcagt cagaggcgat gaaggacgtg ctaatctgcg
0071 ataagcgtcg gtaaggtgat atgaaccgtt ataaccggcg atttccgaat ggggaaaccc agtgtgtttc
0141 gacacactat cattaactga atccataggt taatgaggcg aaccggggga actgaaacat ctaagtaccc
0211 cgaggaaaag aaatcaaccg agattccccc agtagcggcg agcgaacggg gagcagccca gagcctgaat
0281 cagtgtgtgt gttagtggaa gcgtctggaa aggcgcgcga tacagggtga cagccccgta cacaaaaatg
0351 cacatgctgt gagctcgatg agtagggcgg gacacgtggt atcctgtctg aatatggggg gaccatcctc
0421 caaggctaaa tactcctgac tgaccgatag tgaaccagta ccgtgaggga aaggcgaaaa gaaccccggc
0491 gaggggagtg aaaaagaacc tgaaaccgtg tacgtacaag cagtgggagc acgcttaggc gtgtgactgc
0561 gtaccttttg tataatgggt cagcgactta tattctgtag caaggttaac cgaatagggg agccgaaggg
0631 aaaccgagtc ttaactgggc gttaagttgc agggtataga cccgaaaccc ggtgatctag ccatgggcag
0701 gttgaaggtt gggtaacact aactggagga ccgaaccgac taatgttgaa aaattagcgg atgacttgtg
0771 gctgggggtg aaaggccaat caaaccggga gatagctggt tctccccgaa agctatttag gtagcgcctc
0841 gtgaattcat ctccgggggt agagcactgt ttcggcaagg gggtcatccc gacttaccaa cccgatgcaa
0911 actgcgaata ccggagaatg ttatcacggg agacacacgg cgggtgctaa cgtccgtcgt gaagagggaa
0981 acaacccaga ccgccagcta aggtcccaaa gtcatggtta agtgggaaac gatgtgggaa ggcccagaca
1051 gccaggatgt tggcttagaa gcagccatca tttaaagaaa gcgtaatagc tcactggtcg agtcggcctg
1121 cgcggaagat gtaacggggc taaaccatgc accgaagctg cggcagcgac gcttatgcgt tgttgggtag
1191 gggagcgttc tgtaagcctg cgaaggtgtg ctgtgaggca tgctggaggt atcagaagtg cgaatgctga
1261 cataagtaac gataaagcgg gtgaaaagcc cgctcgccgg aagaccaagg gttcctgtcc aacgttaatc
1331 ggggcagggt gagtcgaccc ctaaggcgag gccgaaaggc gtagtcgatg ggaaacaggt taatattcct
1401 gtacttggtg ttactgcgaa ggggggacgg agaaggctat gttggccggg cgacggttgt cccggtttaa
1471 gcgtgtaggc tggttttcca ggcaaatccg gaaaatcaag gctgaggcgt gatgacgagg cactacggtg
1541 ctgaagcaac aaatgccctg cttccaggaa aagcctctaa gcatcaggta acatcaaatc gtaccccaaa
1611 ccgacacagg tggtcaggta gagaatacca aggcgcttga gagaactcgg gtgaaggaac taggcaaaat
1681 ggtgccgtaa cttcgggaga aggcacgctg atatgtaggt gaagcgactt gctcgtggag ctgaaatcag
1751 tcgaagatac cagctggctg caactgttta ttaaaaacac agcactgtgc aaacacgaaa gtggacgtat
1821 acggtgtgac gcctgcccgg tgccggaagg ttaattgatg gggttagcgc aagcgaagct cttgatcgaa
1891 gccccggtaa acggcggccg taactataac ggtcctaagg tagcgaaatt ccttgtcggg taagttccga
1961 cctgcacgaa tggcgtaatg atggccaggc tgtctccacc cgagactcag tgaaattgaa ctcgctgtga
2031 agatgcagtg tacccgcggc aagacggaaa gaccccgtga acctttacta tagcttgaca ctgaacattg
2101 agccttgatg tgtaggatag gtgggaggct tagaagtgtg gacgccagtc tgcatggagc cgaccttgaa
2171 ataccaccct ttaatgtttg atgttctaac gttgacccgt aatccgggtt gcggacagtg tctggtgggt
2241 agtttgactg gggcggtctc ctcctaaaga gtaacggagg agcacgaagg ttggctaatc ctggtcggac
2311 atcaggaggt tagtgcaatg gcataagcca gcttgactgc gagcgtgacg gcgcgagcag gtgcgaaagc
2381 aggtcatagt gatccggtgg ttctgaatgg aagggccatc gctcaacgga taaaaggtac tccggggata
2451 acaggctgat accgcccaag agttcatatc gacggcggtg tttggcacct cgatgtcggc tcatcacatc
2521 ctggggctga agtaggtccc aagggtgatg ctgttcgcca tttaaagtgg tacgcgagct gggtttagaa
2591 cgtcgtgaga cagttcggtc cctatctgcc gtgggcgctg gagaactgag gggggctgct cctagtacga
2661 gaggaccgga gtggacgcat cactggtgtt cgggttgtca tgccaatggc actgcccggt agctaaatgc
2731 ggaagagata agtgctgaaa gcatctaagc acgaaacttg ccccgagatg agttctccct gaccctttaa
2801 gggtcctgaa ggaacgttga agacgacgac gttgataggc cgggtgtgta agcgcagcga tgcgttgagc
2871 taaccggtac taatgaaccg tgaggcttaa ccttacaacg ccgaagctgt tttggcggat gagagaagat
2941 tttcagcctg atacagatta aatcagaacg cagaagcggt ctgataaaac agaatttgcc tggc
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