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PEC Original Annotations
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Essentiality
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Class
|
non-essential
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References (PMID)
|
|
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Deletion
|
OCR62-1
(D)
,
OCR62-6
(D)
|
|
Related gene (W3110 PEC)
|
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Gene Search
|
Search MG1655 PEC by gene name:
lpoB
|
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Related strains
|
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Strains Search
|
Search strains by gene name:
lpoB
Search strains by all related name:
lpoB b1105 ECK1091 JW5157 o213 o213a ycfM
|
General information (Go to Linear View: )
|
|
Gene Name
|
lpoB
|
|
Alternative name
|
b1105,ECK1091,JW5157,o213,o213a,ycfM
|
|
Location, Length
|
1,161,861 - 1,162,502
(
+
)
;
25.04
min
;
642
(bp) ,
213
(aa)
|
|
Product
|
outer membrane lipoprotein
|
|
Operon Name
|
hinT-ycfL-lpoB-thiK-nagZ-ycfP
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Note
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Function
|
|
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Gene Ontology
|
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|
PID
|
1787348
|
EC number
(KEGG Pathway)
|
|
|
SWISS-PROT
(
Show details
[
1
more]
)
|
Entry name(Acc.no)
|
YCFM_ECOLI
(
P75947
;
Q9R424
)
|
|
- Protein name
|
Hypothetical protein ycfM.
|
|
- Synonyms
|
|
|
- Gene name
|
Name=ycfM; OrderedLocusNames=b1105, z1744, ECs1483;
|
| Sequences |
Amino acid
FASTA format
|
0001 MTKMSRYALI TALAMFLAGC VGQREPAPVE EVKPAPEQPA EPQQPVPTVP SVPTIPQQPG PIEHEDQTAP
0071 PAPHIRHYDW NGAMQPMVSK MLGADGVTAG SVLLVDSVNN RTNGSLNAAE ATETLRNALA NNGKFTLVSA
0141 QQLSMAKQQL GLSPQDSLGT RSKAIGIARN VGAHYVLYSS ASGNVNAPTL QMQLMLVQTG EIIWSGKGAV
0211 SQQ
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 ACCATTCCCG CACATTCGGC GGTAACGCTG
-070 TACGGCAGCG CCAATTTTCT GGGGGCGCAC AAAGTCAGAC TTTATCTATA TTTGTAAGGG GTGAATCTTG
0001 atgacaaaaa tgagtcgcta cgccttgatt accgcgctgg cgatgtttct cgccgggtgt gtggggcaac
0071 gtgaacctgc accggtagaa gaagtgaaac cagcgccgga acaaccagcc gagccacaac agcctgtccc
0141 cacagtgccc tcggtgccga cgatcccgca gcagccaggc ccaattgagc acgaagatca aactgcaccg
0211 cctgcgccgc atattcgcca ttatgactgg aatggcgcaa tgcagccgat ggtcagtaag atgcttgggg
0281 ctgacggggt gactgcgggt agcgtcctgc tggttgatag cgttaacaac cgtactaacg gttcgctgaa
0351 tgccgcagaa gcgaccgaaa cgctgcgaaa tgcgctggct aataacggga aatttaccct ggtttccgcc
0421 cagcaactgt cgatggcgaa gcaacagtta ggtttgtcgc cgcaggacag tttaggcacc cgtagtaaag
0491 ccataggcat tgcccgcaat gtcggcgctc attacgtgct gtactccagc gcctctggca acgttaacgc
0561 tccgacccta caaatgcagc tgatgctggt gcagacgggc gaaattatct ggtcaggtaa aggtgccgtt
0631 tcgcagcaat aaTCCCATCA CGCGCGACGA ATTGCTGTCG CGCTTTTTCC CGCAGTATCA TCCCGTCACG
0701 ACGTTTAATA GTGGGCTTAG TGGCGGGAGT TTTCTCATTG AA
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