|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Deletion
|
OCL23
(D)
,
OCL23-14
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
rrfF
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
rrfF
Search strains by all related name:
rrfF b3272 ECK3259 JWR0073 rrfDbeta rrvD
|
General information (Go to Linear View: )
|
|
rRNA Name
|
rrfF
|
|
Alternative name
|
b3272,ECK3259,JWR0073,rrfDbeta,rrvD
|
|
Location, Length
|
3,421,445 - 3,421,564
(
-
)
;
73.74
min
;
120
(bp) ,
|
|
Product
|
5S ribosomal RNA of rrnD operon
|
|
Operon Name
|
rrsD-ileU-alaU-rrlD-rrfD-thrV-rrfF
|
|
Note
|
|
|
Function
|
|
|
Gene Ontology
|
|
|
PID
|
|
EC number
(KEGG Pathway)
|
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
|
|
PSI-BLAST
|
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
|
|
MMBR References
|
Science. 1997;277:1453-1474
The complete genome sequence of Escherichia coli K-12.
Blattner, F. R., G. Plunkett, C. A. Bloch, N. T. Perna, V. Burland, M. Riley, J. Collado-Vides, J. D. Glasner, C. K. Rode, G. F. Mayhew, J. F. McGregor, N. W. Davis, H. A. Kirkpatrick, M. A. Goeden, D. J. Rose, B. Mau, and Y. Shao.
|
| Sequences |
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 agttggtaga gcgcaccctt ggtaagggtg
-070 aggtccccag ttcgactctg ggtatcagca ccacttttta ggttaaagtt cggcagatta gaaaagaatt
0001 tgtctggcgg cagtagcgcg gtggtcccac ctgaccccat gccgaactca gaagtgaaac gccgtagcgc
0071 cgatggtagt gtggggtctc cccatgcgag agtagggaac tgccagacat caaataaaac aaaaggctca
0141 gtcggaagac tgggcctttt gttttatctg ttgtttgtcg gtgaacactc tcccgagtag gacaaatccg
0211 ccgggagcgg
|
