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PEC Original Annotations
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|
Essentiality
|
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Class
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essential
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|
References (PMID)
|
J Bacteriol. 1989;171(12):6511-6.
New mre genes mreC and mreD, responsible for formation of the rod shape of Escherichia coli cells.
Wachi M, Doi M, Okada Y, Matsuhashi M.
(
2687239
)
|
|
|
Deletion
|
OCL25,26-1
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
mreC
|
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Related strains
|
|
Strains Search
|
Search strains by gene name:
mreC
Search strains by all related name:
mreC b3250 ECK3238 JW3219
|
General information (Go to Linear View: )
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|
Gene Name
|
mreC
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|
Alternative name
|
b3250,ECK3238,JW3219
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|
Location, Length
|
3,396,897 - 3,398,000
(
-
)
;
73.21
min
;
1104
(bp) ,
367
(aa)
|
|
Product
|
cell wall structural complex MreBCD transmembrane component MreC
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Operon Name
|
mreBCD
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Note
|
rod shape-determining protein; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_process: GO:0009252 - peptidoglycan biosynthetic process
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Function
|
structural component; Murein sacculus, peptidoglycan
|
|
Gene Ontology
|
GO:0005886
;
plasma membrane ( mreC )
GO:0008360
;
regulation of cell shape ( mreC )
GO:0016020
;
membrane ( mreC )
|
|
PID
|
1789648
|
EC number
(KEGG Pathway)
|
|
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SWISS-PROT
(
Show details
[
2
more]
)
|
Entry name(Acc.no)
|
MREC_ECOLI
(
P16926
;
P13028
)
|
|
- Protein name
|
Rod shape-determining protein mreC.
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- Synonyms
|
|
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- Gene name
|
Name=mreC; OrderedLocusNames=b3250;
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Homology Analysis
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|
BLAST
|
|
Bacteria
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|
GTOP
|
mreC
(
homologous genes of other bacterias
)
|
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PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
Chain A, Mrec Lysteria Monocytogenes
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SWISS-PROT
(database updated :
2007.02.20
)
|
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BLAST
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Rod shape-determining protein mreC
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PSI-BLAST
|
Collagen alpha-3
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nr
(database updated :
2007.02.20
)
|
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BLAST
|
rod shape-determining protein [Shigella sonnei Ss046]
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Pfam 28.0
(database updated :
2015-05
)
|
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Pfam
|
|
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PROSITE
|
|
PROSITE
|
GLYCOSAMINOGLYCAN
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
MYRISTYL
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MMBR References
|
Gene. 1991;106(1):135-6.
Sequence of the downstream flanking region of the shape-determining genes mreBCD of Escherichia coli.
Wachi M, Doi M, Ueda T, Ueki M, Tsuritani K, Nagai K, Matsuhashi M.
(
1937035
)
|
J Bacteriol. 1989;171(12):6511-6.
New mre genes mreC and mreD, responsible for formation of the rod shape of Escherichia coli cells.
Wachi M, Doi M, Okada Y, Matsuhashi M.
(
2687239
)
|
| Sequences |
Amino acid
FASTA format
|
0001 MKPIFSRGPS LQIRLILAVL VALGIIIADS RLGTFSQIRT YMDTAVSPFY FVSNAPRELL DGVSQTLASR
0071 DQLELENRAL RQELLLKNSE LLMLGQYKQE NARLRELLGS PLRQDEQKMV TQVISTVNDP YSDQVVIDKG
0141 SVNGVYEGQP VISDKGVVGQ VVAVAKLTSR VLLICDATHA LPIQVLRNDI RVIAAGNGCT DDLQLEHLPA
0211 NTDIRVGDVL VTSGLGGRFP EGYPVAVVSS VKLDTQRAYT VIQARPTAGL QRLRYLLLLW GADRNGANPM
0281 TPEEVHRVAN ERLMQMMPQV LPSPDAMGPK LPEPATGIAQ PTPQQPATGN AATAPAAPTQ PAANRSPQRA
0351 TPPQSGAQPP ARAPGGQ
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 acatgcacgg cggcgacctg ttcagcgaag
-070 agtaatcgga tgcaggcagg ggaagtgtct gtttaccctg cctggtctga tacgagaata cgcataactt
0001 atgaagccaa tttttagccg tggcccgtcg ctacagattc gccttattct ggcggtgctg gtggcgctcg
0071 gcattattat tgccgacagc cgcctgggga cgttcagtca aatccgtact tatatggata ccgccgtcag
0141 tcctttctac tttgtttcca atgctcctcg tgaattgctg gatggcgtat cgcagacgct ggcctcgcgt
0211 gaccaattag aacttgaaaa ccgggcgtta cgtcaggaac tgttgctgaa aaacagtgaa ctgctgatgc
0281 ttggacaata caaacaggag aacgcgcgtc tgcgcgagct gctgggttcc ccgctgcgtc aggatgagca
0351 gaaaatggtg actcaggtta tctccacggt taacgatcct tatagcgatc aagttgttat cgataaaggt
0421 agcgttaatg gcgtttatga aggccagccg gtcatcagcg acaaaggtgt tgttggtcag gtggtggccg
0491 tcgctaaact gaccagtcgc gtgctgctga tttgtgatgc gacccacgcg ctgccaatcc aggtgctgcg
0561 caacgatatc cgcgtaattg cagccggtaa cggttgtacg gatgatttgc agcttgagca tctgccggcg
0631 aatacggata ttcgtgttgg tgatgtgctg gtgacttccg gtctgggcgg tcgtttcccg gaaggctatc
0701 cggtcgcggt tgtctcttcc gtaaaactcg atacccagcg cgcttatact gtgattcagg cgcgtccgac
0771 tgcagggctg caacgtttgc gttatctgct gctgctgtgg ggggcagatc gtaacggcgc taacccgatg
0841 acgccggaag aggtgcatcg tgttgctaat gaacgtctga tgcagatgat gccgcaggta ttgccttcgc
0911 cagacgcgat ggggccaaag ttacctgaac cggcaacggg gatcgctcag ccgactccgc agcaaccggc
0981 gacaggaaat gcagctactg cgcctgctgc gccgacacag cctgctgcta atcgctctcc acaaagggct
1051 acgccgccgc aaagtggtgc tcaaccgcct gcgcgtgcgc cgggagggca atagtggcga gctatcgtag
1121 ccagggacgc tgggtaatct ggctctcttt cctcattgcg ctgttgctgc aaatcatgcc ctggccggat
1191 aacctgattg tttt
|
