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PEC Original Annotations
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Essentiality
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Class
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non-essential
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References (PMID)
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Deletion
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OCL30
(D)
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Related gene (W3110 PEC)
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Gene Search
|
Search MG1655 PEC by gene name:
lpoA
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Related strains
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Strains Search
|
Search strains by gene name:
lpoA
Search strains by all related name:
lpoA b3147 ECK3135 JW3116 o678 yraM
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General information (Go to Linear View: )
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Gene Name
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lpoA
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Alternative name
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b3147,ECK3135,JW3116,o678,yraM
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Location, Length
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3,291,422 - 3,293,458
(
+
)
;
70.94
min
;
2037
(bp) ,
678
(aa)
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Product
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hypothetical protein
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Operon Name
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lpoA
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Note
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putative glycosylase
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Function
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putative enzyme; Not classified
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Gene Ontology
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GO:0005515
;
protein binding ( yraM )
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PID
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1789537
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EC number
(KEGG Pathway)
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SWISS-PROT
(
Show details
[
2
more]
)
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Entry name(Acc.no)
|
YRAM_ECOLI
(
P45464
)
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- Protein name
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Hypothetical protein yraM.
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- Synonyms
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- Gene name
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Name=yraM; OrderedLocusNames=b3147;
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Homology Analysis
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BLAST
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Bacteria
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GTOP
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yraM
(
homologous genes of other bacterias
)
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PDB
(database updated :
2007.02.20
)
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PSI-BLAST
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Chain , Complex Of The 70-Kda Soluble Lytic Transglycosylase With Bulgecin A
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SWISS-PROT
(database updated :
2007.02.20
)
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BLAST
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Hypothetical protein yraM
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PSI-BLAST
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Trigger factor
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nr
(database updated :
2007.02.20
)
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BLAST
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COG3107: Putative lipoprotein [Escherichia coli 101-1]
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Pfam 28.0
(database updated :
2015-05
)
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Pfam
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PROSITE
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PROSITE
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ASN_GLYCOSYLATION
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
TYR_PHOSPHO_SITE
MYRISTYL
PROKAR_LIPOPROTEIN
ATP_GTP_A
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| Sequences |
Amino acid
FASTA format
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0001 MVPSTFSRLK AARCLPVVLA ALIFAGCGTH TPDQSTAYMQ GTAQADSAFY LQQMQQSSDD TRINWQLLAI
0071 RALVKEGKTG QAVELFNQLP QELNDAQRRE KTLLAVEIKL AQKDFAGAQN LLAKITPADL EQNQQARYWQ
0141 AKIDASQGRP SIDLLRALIA QEPLLGAKEK QQNIDATWQA LSSMTQEQAN TLVINADENI LQGWLDLQRV
0211 WFDNRNDPDM MKAGIADWQK RYPNNPGAKM LPTQLVNVKA FKPASTNKIA LLLPLNGQAA VFGRTIQQGF
0281 EAAKNIGTQP VAAQVAAAPA ADVAEQPQPQ TVDGVASPAQ ASVSDLTGEQ PAAQPVPVSA PATSTAAVSA
0351 PANPSAELKI YDTSSQPLSQ ILSQVQQDGA SIVVGPLLKN NVEELLKSNT PLNVLALNQP ENIENRVNIC
0421 YFALSPEDEA RDAARHIRDQ GKQAPLVLIP RSSLGDRVAN AFAQEWQKLG GGTVLQQKFG STSELRAGVN
0491 GGSGIALTGS PITLRATTDS GMTTNNPTLQ TTPTDDQFTN NGGRVDAVYI VATPGEIAFI KPMIAMRNGS
0561 QSGATLYASS RSAQGTAGPD FRLEMEGLQY SEIPMLAGGN LPLMQQALSA VNNDYSLARM YAMGVDAWSL
0631 ANHFSQMRQV QGFEINGNTG SLTANPDCVI NRNLSWLQYQ QGQVVPVS
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Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 GCCCTGAGAA TTATCCGCCG ATTGGTGTTG
-070 TTTCATTGTG TCGTCCGTAT TGCCGATTTA ATATTGAGCA TTGCGTAAAA AAAATATCAC TGGATACATT
0001 atggtaccct caacattttc tcgtttgaaa gccgcgcgtt gtctgcctgt tgttctggca gccctgattt
0071 tcgccggttg tggcacccat actcccgatc agtccactgc ttatatgcag ggcacggcgc aggctgattc
0141 tgccttttat cttcagcaga tgcagcaaag ctctgatgat accaggatca actggcaatt actcgccatt
0211 cgtgcactgg tgaaagaagg taaaaccggg caggcggttg agttgtttaa ccaactaccg caagaactga
0281 acgatgctca gcgtcgcgag aaaacactgc tggcggtaga gattaaactg gcgcagaaag attttgctgg
0351 cgcgcaaaac ttgctggcga aaatcacacc tgccgattta gaacaaaacc agcaagcgcg ttactggcag
0421 gcaaaaatcg atgccagcca ggggcgtcct tccattgatt tactgcgcgc gttaattgct caggaaccgc
0491 tgcttggcgc gaaagaaaaa cagcagaata ttgatgccac ctggcaggcg ctctcctcca tgactcagga
0561 acaggcgaat acgctggtga tcaacgccga cgaaaatatt ctgcaaggct ggctggatct gcagcgcgtc
0631 tggtttgata accgtaacga tcccgacatg atgaaagccg ggatcgccga ctggcagaaa cgttatccga
0701 acaatccggg cgcgaaaatg ctgccaacgc agttggttaa cgtaaaagcg tttaaaccag cctcgaccaa
0771 caaaatcgcc ctgctgttgc cactgaatgg ccaggcagcg gtatttggtc gcactattca gcaaggcttt
0841 gaagcggcga aaaatatcgg cactcagcca gtggcagctc aggtagctgc cgcacctgcc gcagacgtag
0911 ctgaacaacc tcagccgcaa accgtggatg gcgttgccag cccggcacaa gcctcggtta gcgatctgac
0981 cggtgaacag cctgcagccc agccggtgcc tgtaagcgcc ccggcgacaa gcaccgcagc ggtaagcgca
1051 cccgcaaatc catccgcaga gctgaaaatc tacgatacct catcacaacc acttagccag atcttaagcc
1121 aggttcagca ggatggcgcg agtattgtgg tcggtccgtt gctgaaaaat aacgttgaag agttgctgaa
1191 gagcaacact ccgctgaacg tactggcact gaaccagccg gagaatatcg aaaatcgcgt caatatttgt
1261 tacttcgcgc tttcaccgga agacgaagcg cgcgatgcag cgcgtcatat tcgtgaccag ggtaaacaag
1331 cgccgctggt gctgatccca cgcagttcat tgggcgatcg cgtagccaat gcgtttgcgc aagagtggca
1401 gaaactgggc ggcggcaccg ttctgcaaca aaaatttggt tccaccagcg aattacgcgc gggtgttaac
1471 ggcggttctg gtattgcttt aacgggtagc ccgattactc tcagagcgac aaccgactcc ggcatgacga
1541 ccaacaatcc aacgctgcaa accacgccaa ccgatgacca gttcaccaat aatggcggtc gtgtcgatgc
1611 ggtgtacatt gtggcaacgc cgggtgaaat cgcttttatc aaaccgatga tcgccatgcg taacggtagc
1681 cagagcggtg caacgctgta cgccagctcc cgcagtgcgc aagggaccgc tggcccggat ttccgactgg
1751 agatggaagg cttgcagtac agcgaaatcc cgatgctggc aggcggtaat ctaccgttaa tgcagcaggc
1821 actcagcgcg gtgaataacg attattcact ggctcgcatg tatgcgatgg gcgtcgatgc ctggtcgctg
1891 gcaaatcatt tctcacaaat gcgccaggtt cagggttttg aaatcaacgg taataccgga agcctgacgg
1961 ctaacccgga ttgcgtgatt aacaggaact tatcatggct acagtaccaa caaggtcagg tagtccccgt
2031 cagttaaCCA CCAAACAGAC CGGCGATGCG TGGGAAGCAC AAGCGCGTCG CTGGCTGGAA GGCAAAGGAC
2101 TGCGGTTTAT CGCCGCTAAC GTGAACGAGC GTGGCGG
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