MG1655
W3110
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Gene Report : rhaD
PEC Original Annotations
Essentiality
     Class non-essential
     References (PMID)  
     Deletion OCR07 (D)  
Related gene (W3110 PEC)
     Gene Search Search MG1655 PEC by gene name:  rhaD
Related strains
     Strains Search Search strains by gene name:  rhaD   Search strains by all related name:  rhaD b3902 ECK3895 JW3873

General information  (Go to Linear View:)
 Gene Name rhaD  
 Alternative name b3902,ECK3895,JW3873  
 Location, Length 4,091,471 - 4,092,295 (  -  ) ;   88.18 min ; 825 (bp) ,   274 (aa) Go to Linear View
 Product rhamnulose-1-phosphate aldolase  
 Operon Name rhaBAD  
 Note rhamnulose-phosphate aldolase; GO_process: GO:0016052 - carbohydrate catabolic process  
 Function enzyme; Degradation of small molecules: Carbon compounds  
 Gene Ontology GO:0005737 ; cytoplasm ( rhaD )
GO:0008270 ; zinc ion binding ( rhaD )
GO:0008994 ; rhamnulose-1-phosphate aldolase activity ( rhaD )
GO:0016829 ; lyase activity ( rhaD )
GO:0019299 ; rhamnose metabolic process ( rhaD )
GO:0046872 ; metal ion binding ( rhaD )
 PID 1790336  
 EC number
  (KEGG Pathway)
 
4.1.2.19  
SWISS-PROT  ( Show details [ 2 more] )
  botton Entry name(Acc.no) RHAD_ECOLI ( P32169 )
    -  Protein name Rhamnulose-1-phosphate aldolase  
    -  Synonyms EC 4.1.2.19  
    -  Gene name Name=rhaD; Synonyms=rhuA; OrderedLocusNames=b3902;  

 Linear View (Whole Mode)
View Location
   4080.0  –  4105.0 (KBP)

Homology Analysis
BLAST
    Bacteria
         GTOP rhaD (  homologous genes of other bacterias  )  
    PDB     (database updated : 2007.02.20 )
         PSI-BLAST Chain A, L-Rhamnulose-1-Phosphate Aldolase From Escherichia Coli  
    SWISS-PROT     (database updated : 2007.02.20 )
         BLAST Rhamnulose-1-phosphate aldolase  
         PSI-BLAST Rhamnulose-1-phosphate aldolase
    nr     (database updated : 2007.02.20 )
         BLAST rhamnulose-1-phosphate aldolase [Escherichia coli K12]  
Pfam 28.0   (database updated : 2015-05 )
    Pfam
PROSITE
    PROSITE ASN_GLYCOSYLATION    PKC_PHOSPHO_SITE    CK2_PHOSPHO_SITE    TYR_PHOSPHO_SITE    MYRISTYL    AMIDATION     

Other Cross-Reference
    COG COG0235G 
    EcoCyc rhaD 

MMBR References
Nucleic Acids Res. 1993;21:3391-3398
Analysis of the Escherichia coli genome. III. DNA sequence of the region from 87.2 to 89.2 minutes.
Plunkett, G., V. D. Burland, D. L. Daniels, and F. R. Blattner.
J Mol Biol. 1987;196(4):789-99.
Positive regulation of the Escherichia coli L-rhamnose operon is mediated by the products of tandemly repeated regulatory genes.
Tobin JF, Schleif RF. ( 3316663 )

Sequences
Amino acid
FASTA format
0001 MQNITQSWFV QGMIKATTDA WLKGWDERNG GNLTLRLDDA DIAPYHDNFH QQPRYIPLSQ PMPLLANTPF 
0071 IVTGSGKFFR NVQLDPAANL GIVKVDSDGA GYHILWGLTN EAVPTSELPA HFLSHCERIK ATNGKDRVIM 
0141 HCHATNLIAL TYVLENDTAV FTRQLWEGST ECLVVFPDGV GILPWMVPGT DEIGQATAQE MQKHSLVLWP 
0211 FHGVFGSGPT LDETFGLIDT AEKSAQVLVK VYSMGGMKQT ISREELIALG KRFGVTPLAS ALAL

Nucleotide
FASTA format

View sequence out neighbor 100bp
-100                                             cagcgtcgca tcaggcattg attgccggat 
-070 gcggcgcgag cgccttatcc ggcctacggg tcgtgcatcc gacaacaccg aatttacagg aacacagaac 
0001 atgcaaaaca ttactcagtc ctggtttgtc cagggaatga tcaaagccac caccgacgcc tggctgaaag 
0071 gctgggatga gcgcaacggc ggcaacctga cgctacgcct ggatgacgcc gatatcgcac catatcacga 
0141 caatttccac caacaaccgc gctatatccc gctcagccag cccatgcctt tactggcaaa tacaccgttt 
0211 attgtcaccg gctcgggcaa attcttccgt aacgtccagc ttgatcctgc ggctaactta ggcatcgtaa 
0281 aagtcgacag cgacggcgcg ggctaccaca ttctttgggg gttaaccaac gaagccgtcc ccacttccga 
0351 acttccggct cacttccttt cccactgcga gcgcattaaa gccaccaacg gcaaagatcg ggtgatcatg 
0421 cactgccacg ccaccaacct gatcgccctc acctatgtac ttgaaaacga caccgcggtc ttcactcgcc 
0491 aactgtggga aggcagcacc gagtgtctgg tggtattccc ggatggcgtt ggcattttgc cgtggatggt 
0561 gcccggcacg gacgaaatcg gccaggcgac cgcacaagag atgcaaaaac attcgctggt gttgtggccc 
0631 ttccacggcg tcttcggcag cggaccgacg ctggatgaaa ccttcggttt aatcgacacc gcagaaaaat 
0701 cagcacaagt attagtgaag gtttattcga tgggcggcat gaaacagacc atcagccgtg aagagttgat 
0771 agcgctcggc aagcgtttcg gcgttacgcc actcgccagt gcgctggcgc tgtaaggagc aaacatgatc 
0841 cgcaaagcct ttgtcatgca ggtaaacccc gacgcccacg aagagtatca gcgtcggcat aatcccatct 
0911 ggccagaact ggaag