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PEC Original Annotations
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|
Essentiality
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Class
|
non-essential
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References (PMID)
|
|
|
Deletion
|
OCR36
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
yafD
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
yafD
Search strains by all related name:
yafD b0209 ECK0209 JW5017
|
General information (Go to Linear View: )
|
|
Gene Name
|
yafD
|
|
Alternative name
|
b0209,ECK0209,JW5017
|
|
Location, Length
|
231,122 - 231,922
(
+
)
;
4.98
min
;
801
(bp) ,
266
(aa)
|
|
Product
|
hypothetical protein
|
|
Operon Name
|
yafDE
|
|
Note
|
|
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Function
|
|
|
Gene Ontology
|
GO:0005737
;
cytoplasm ( yafD )
|
|
PID
|
1786403
|
EC number
(KEGG Pathway)
|
|
|
SWISS-PROT
(
Show details
)
|
Entry name(Acc.no)
|
YAFD_ECOLI
(
P30865
;
P75671
)
|
|
- Protein name
|
Hypothetical UPF0294 protein yafD.
|
|
- Synonyms
|
|
|
- Gene name
|
OrderedLocusNames=b0209, c0246, z0232, ECs0205, SF0195, S0203;
|
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Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
yafD
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
UPF0294 protein yafD
|
|
PSI-BLAST
|
UPF0294 protein yafD
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
hypothetical protein Z0232 [Escherichia coli O157:H7 EDL933]
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
ASN_GLYCOSYLATION
CAMP_PHOSPHO_SITE
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
TYR_PHOSPHO_SITE
MYRISTYL
|
| Sequences |
Amino acid
FASTA format
|
0001 MRKNTYAMRY VAGQPAERIL PPGSFASIGQ ALPPGEPLST EERIRILVWN IYKQQRAEWL SVLKNYGKDA
0071 HLVLLQEAQT TPELVQFATA NYLAADQVPA FVLPQHPSGV MTLSAAHPVY CCPLREREPI LRLAKSALVT
0141 VYPLPDTRLL MVVNIHAVNF SLGVDVYSKQ LLPIGDQIAH HSGPVIMAGD FNAWSRRRMN ALYRFAREMS
0211 LRQVRFTDDQ RRRAFGRPLD FVFYRGLNVS EASVLVTRAS DHNPLLVEFS PGKPDK
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 ATATACAATT GCTCGTTGAA AGAGTGAGCT
-070 AAAATCCCTA TAACAGTAGA ACCCTCCCGA GTGCGGAAGG GTTGACGTAA TAGAGGTTTC AAAGTCAAAA
0001 gtgcgaaaaa acacctatgc catgcgctat gttgccggac aacctgcgga aaggatctta ccgccggggt
0071 cttttgcgag catcggccag gcattaccac ctggggaacc gttaagtacc gaagagcgta ttcggatcct
0141 ggtgtggaac atatacaaac agcaacgcgc tgaatggttg tcggtattaa agaactacgg caaagatgca
0211 catctggtgt tattgcagga agcgcagaca acgccagagt tagtacagtt tgcgaccgct aactatcttg
0281 ccgccgatca ggtacccgct ttcgtgctgc cacaacatcc ttctggcgta atgacccttt cggcggcaca
0351 tccagtgtat tgctgcccgt tacgtgaacg agaacccatt ttgcgtctgg cgaagtcggc actggtgacg
0421 gtctatccat tacctgacac ccgcctgttg atggtggtta atatacacgc cgtcaacttc agtctgggcg
0491 tggatgtcta tagtaagcag ttacttccta ttggcgatca gatagctcac cacagcggcc cggtcattat
0561 ggcgggagat ttcaatgcct ggagccgtag aaggatgaac gcgttatatc gctttgcgcg ggaaatgtcg
0631 ctgcgccagg tgcgttttac cgatgatcag cgccgtcggg cgtttggtcg cccgctcgat tttgttttct
0701 accgtggtct gaacgtcagt gaagcttctg tactggttac gcgcgcttcc gatcacaatc cgctactcgt
0771 tgaattcagt cccggcaagc ctgataaata aGGTATGTCA GGTCTGCCAC AGGGCAGACC AACGTTTGGC
0841 GCTGCGCAAA ACGTGAGCGC GGTGGTGGCG TATGACTTAT CTGCCCACAT GCTGGATGTC G
|
