|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Deletion
|
20
(LD)
,
DE(PLK1608)
,
OCR70,L90-5 (LD 20-1_P/O)
(D)
,
OCR70,L90-6 (LD 20-1_P/O & 20-2TC)
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
ydaM
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
ydaM
Search strains by all related name:
ydaM b1341 ECK1338 f430 JW5206
|
General information (Go to Linear View: )
|
|
Gene Name
|
ydaM
|
|
Alternative name
|
b1341,ECK1338,f430,JW5206
|
|
Location, Length
|
1,404,587 - 1,405,819
(
-
)
;
30.27
min
;
1233
(bp) ,
410
(aa)
|
|
Product
|
diguanylate cyclase, csgD regulator
|
|
Operon Name
|
ydaM
|
|
Note
|
|
|
Function
|
|
|
Gene Ontology
|
GO:0000155
;
two-component sensor activity ( ydaM )
GO:0000160
;
two-component signal transduction system (phosphorelay) ( ydaM )
GO:0004871
;
signal transducer activity ( ydaM )
GO:0006355
;
regulation of transcription, DNA-dependent ( ydaM )
GO:0007165
;
signal transduction ( ydaM )
|
|
PID
|
87081881
|
EC number
(KEGG Pathway)
|
|
|
SWISS-PROT
(
Show details
)
|
Entry name(Acc.no)
|
YDAM_ECOLI
(
P77302
;
P76846
)
|
|
- Protein name
|
Hypothetical protein ydaM.
|
|
- Synonyms
|
|
|
- Gene name
|
Name=ydaM; OrderedLocusNames=b1341;
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
ydaM
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
Chain A, Response Regulator Pled In Complex With C-Digmp
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
Hypothetical protein ydaM
|
|
PSI-BLAST
|
Hypothetical protein ydaM
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
Hypothetical protein ydaM
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
ASN_GLYCOSYLATION
CAMP_PHOSPHO_SITE
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
TYR_PHOSPHO_SITE
MYRISTYL
AMIDATION
|
| Sequences |
Amino acid
FASTA format
|
0001 MITHNFNTLD LLTSPVWIVS PFEEQLIYAN SAAKLLMQDL TFSQLRTGPY SVSSQKELPK YLSDLQNQHD
0071 IIEILTVQRK EEETALSCRL VLRKLTETEP VIIFEGIEAP ATLGLKASRS ANYQRKKQGF YARFFLTNSA
0141 PMLLIDPSRD GQIVDANLAA LNFYGYNHET MCQKHTWEIN MLGRRVMPIM HEISHLPGGH KPLNFVHKLA
0211 DGSTRHVQTY AGPIEIYGDK LMLCIVHDIT EQKRLEEQLE HAAHHDAMTG LLNRRQFYHI TEPGQMQHLA
0281 IAQDYSLLLI DTDRFKHIND LYGHSKGDEV LCALARTLES CARKGDLVFR WGGEEFVLLL PRTPLDTALS
0351 LAETIRVSVA KVSISGLPRF TVSIGVAHHE GNESIDELFK RVDDALYRAK NDGRNRVLAA
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 tgttaaatag cgtctatcat tatcagaatt
-070 atctgatcat atgacgtggc ttttttgcga tcggatagca acaaaaattg ataaaaataa cgggatctca
0001 atgattacgc acaacttcaa taccctggac ttactcacca gtcctgtctg gatcgtttcg ccctttgagg
0071 aacagttaat ttatgccaat agcgcggcga aactgttgat gcaagacctc acgtttagtc agctacgaac
0141 cggaccctat tccgtctcct cacaaaaaga actgccgaaa tacctctccg atctgcaaaa ccaacacgat
0211 attatcgaaa tcctcactgt tcagcgtaaa gaagaggaaa cagcattgag ctgtcggctt gttttgcgaa
0281 agctgacaga aacagaaccg gtgattattt tcgaaggtat cgaagcgccg gcaacgctgg gtttaaaagc
0351 cagtcgctcg gcaaattatc agcgcaaaaa acaaggtttt tatgcgcgct tttttctgac taactctgca
0421 ccaatgttgt tgattgaccc gtcacgagat ggacaaatcg tcgatgctaa cctcgccgcg ctcaatttct
0491 atggttataa ccatgaaacg atgtgccaga aacatacctg ggaaataaat atgctcgggc gtcgcgtcat
0561 gcctatcatg catgaaatct cgcatttacc cggtggtcat aaacctttga attttgttca taaactggcg
0631 gatggttcga ctcgtcatgt gcagacctat gccggaccga ttgaaattta tggcgacaag ctcatgttat
0701 gtattgtgca tgatattact gagcaaaaac ggctggagga gcagctggaa catgctgctc accatgacgc
0771 gatgaccgga ttactgaatc ggcgacagtt ttatcacatt acggaaccag gccaaatgca gcatctcgcc
0841 atcgctcagg attacagctt gttgctcatc gacaccgatc gttttaaaca cattaacgat ctctatgggc
0911 attctaaagg tgatgaggtg ttatgcgccc tcgcccgcac cctcgaaagt tgcgctcgca aaggcgattt
0981 ggtgtttcgt tggggaggcg aagagtttgt cttattgcta ccaagaaccc cactggatac cgcgctttcg
1051 ctggctgaaa ctatccgcgt aagcgtggca aaagtgagta tttcgggctt accacgcttt accgtcagca
1121 ttggtgtggc gcatcacgaa ggaaatgaaa gcatcgatga actgtttaaa cgcgttgatg atgctttgta
1191 tcgggcgaaa aatgatggac gcaaccgcgt gctggcggca taagccgcgg atgcgtctcg agatcaacga
1261 ctgcgcttag cgtggcgctc ccagttttct tgcttcgcct gcgccgtttt acgtagtgcg acgtaacacg
1331 ccc
|
