|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
essential
|
|
References (PMID)
|
Mol Microbiol. 2002;45(5):1289-302.
Imp/OstA is required for cell envelope biogenesis in Escherichia coli.
Braun M, Silhavy TJ.
(
12207697
)
|
|
|
Deletion
|
OCR29
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
lptD
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
lptD
Search strains by all related name:
lptD b0054 ECK0055 imp JW0053 ostA yabG
|
General information (Go to Linear View: )
|
|
Gene Name
|
lptD
|
|
Alternative name
|
b0054,ECK0055,imp,JW0053,ostA,yabG
|
|
Location, Length
|
54,755 - 57,109
(
-
)
;
1.18
min
;
2355
(bp) ,
784
(aa)
|
|
Product
|
LPS assembly OM complex LptDE, beta-barrel component
|
|
Operon Name
|
lptD-surA-pdxA-rsmA-apaGH
|
|
Note
|
organic solvent tolerance; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane
|
|
Function
|
phenotype; Adaptations, atypical conditions
|
|
Gene Ontology
|
GO:0009279
;
cell outer membrane ( imp )
GO:0010033
;
response to organic substance ( imp )
GO:0016020
;
membrane ( imp )
GO:0016044
;
membrane organization and biogenesis ( imp )
GO:0019867
;
outer membrane ( imp )
GO:0043165
;
outer membrane biogenesis (sensu Proteobacteria) ( imp )
|
|
PID
|
1786239
|
EC number
(KEGG Pathway)
|
|
|
Verified Protein Starts
(data
compiled from literature and appropriate citations are available from EcoGene)
|
|
EcoGene
|
imp
(
EG11569
)
|
|
Number of removed
|
24 aa cleaved
|
|
SWISS-PROT
(
Show details
[
2
more]
)
|
Entry name(Acc.no)
|
OSTA_ECOLI
(
P31554
;
P75631
)
|
|
- Protein name
|
Organic solvent tolerance protein precursor.
|
|
- Synonyms
|
|
|
- Gene name
|
Name=imp; Synonyms=ostA; OrderedLocusNames=b0054;
|
|
MMBR References
|
Genetics 1989;122:491-501
Identification and characterization of a new gene of Escherichia coli K-12 involved in outer membrane permeability.
Sampson, B. A., R. Misra, and S. A. Benson.
|
| Sequences |
Amino acid
FASTA format
|
0001 MKKRIPTLLA TMIATALYSQ QGLAADLASQ CMLGVPSYDR PLVQGDTNDL PVTINADHAK GDYPDDAVFT
0071 GSVDIMQGNS RLQADEVQLH QKEAPGQPEP VRTVDALGNV HYDDNQVILK GPKGWANLNT KDTNVWEGDY
0141 QMVGRQGRGK ADLMKQRGEN RYTILDNGSF TSCLPGSDTW SVVGSEIIHD REEQVAEIWN ARFKVGPVPI
0211 FYSPYLQLPV GDKRRSGFLI PNAKYTTTNY FEFYLPYYWN IAPNMDATIT PHYMHRRGNI MWENEFRYLS
0281 QAGAGLMELD YLPSDKVYED EHPNDDSSRR WLFYWNHSGV MDQVWRFNVD YTKVSDPSYF NDFDNKYGSS
0351 TDGYATQKFS VGYAVQNFNA TVSTKQFQVF SEQNTSSYSA EPQLDVNYYQ NDVGPFDTRI YGQAVHFVNT
0421 RDDMPEATRV HLEPTINLPL SNNWGSINTE AKLLATHYQQ TNLDWYNSRN TTKLDESVNR VMPQFKVDGK
0491 MVFERDMEML APGYTQTLEP RAQYLYVPYR DQSDIYNYDS SLLQSDYSGL FRDRTYGGLD RIASANQVTT
0561 GVTSRIYDDA AVERFNISVG QIYYFTESRT GDDNITWEND DKTGSLVWAG DTYWRISERW GLRGGIQYDT
0631 RLDNVATSNS SIEYRRDEDR LVQLNYRYAS PEYIQATLPK YYSTAEQYKN GISQVGAVAS WPIADRWSIV
0701 GAYYYDTNAN KQADSMLGVQ YSSCCYAIRV GYERKLNGWD NDKQHAVYDN AIGFNIELRG LSSNYGLGTQ
0771 EMLRSNILPY QNTL
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 ttcggacagg attaacacta gcgtagagat
-070 gacgagtacg ttagtctctg accgtttgtc acgcgcaacg ttaccgatga tggaacaata aaatcaacgt
0001 atgaaaaaac gtatccccac tctcctggcc accatgattg ccaccgccct ttatagtcaa cagggactgg
0071 cagccgacct cgcctcacag tgcatgttgg gcgtgccaag ctatgaccgt cctctggtac agggcgatac
0141 caatgactta cccgtgacta tcaatgctga ccacgcgaaa ggggactacc cggatgacgc cgtgtttact
0211 ggcagcgtgg atatcatgca gggtaacagc cgtctgcagg ccgacgaagt gcagctccat caaaaagagg
0281 caccaggaca accggagccg gtacgtaccg ttgatgcgct cggtaatgtc cattacgacg ataaccaggt
0351 gatcctcaaa gggccgaaag gctgggcgaa tctgaacacc aaagatacca acgtctggga aggtgattac
0421 cagatggtgg gtcgccaggg tcgcggtaaa gcggacctga tgaaacaacg tggcgaaaac cgctatacca
0491 ttctggataa cggtagcttt acctcctgtc tgccgggttc tgacacctgg agcgtggtag gtagcgaaat
0561 tattcatgac cgcgaagaac aagttgcgga gatctggaac gcccgcttta aggtgggtcc ggtaccgatc
0631 ttttatagcc cctatttgca gttgccggtg ggtgacaaac gtcgctctgg tttcttgatc ccgaacgcca
0701 agtacaccac caccaactac tttgagttct acctgccata ttactggaac atcgcgccaa atatggatgc
0771 caccatcacg ccgcattata tgcatcgtcg tggcaacatc atgtgggaga acgaattccg ctacctctcc
0841 caggcgggcg ctggcttgat ggaactggac tatctgcctt cagataaagt ctatgaagat gaacacccga
0911 acgatgacag ttcacgtcgt tggttattct actggaacca ctccggggtc atggatcagg tgtggcgttt
0981 caacgtcgac tacaccaagg tcagcgatcc tagctacttc aatgatttcg ataacaagta cggttccagt
1051 actgacggct acgcaacgca aaaattcagc gttggctatg cggtgcaaaa cttcaatgcc accgtttcaa
1121 ccaagcagtt ccaggttttc agcgaacaga acaccagtag ctactcggca gagccgcagt tagacgttaa
1191 ttactaccag aatgatgttg gtccgtttga tacgcgtatt tacggccagg cagtgcactt tgttaacacc
1261 agagacgaca tgcctgaagc aacccgtgtt cacctggaac cgaccatcaa tttgccgctc tctaataact
1331 ggggcagcat caataccgaa gcgaagttgc tggcaaccca ttatcagcaa accaatcttg actggtataa
1401 ctccagaaac acgaccaagc tggacgaatc cgttaaccgc gtaatgccgc aattcaaagt tgacggcaaa
1471 atggtctttg aacgcgatat ggaaatgctg gctccgggtt atacccaaac gctggaaccg cgcgcgcagt
1541 atttgtacgt gccgtatcgc gatcagagcg acatctataa ctacgactcg tctctgctgc aatctgacta
1611 ctctggcctg ttccgggacc ggacttacgg cggtcttgac cgtattgcct ccgctaacca ggtgacgacc
1681 ggtgtcacat ctcgcatata tgatgatgct gccgttgaac gttttaatat ttccgttggt caaatctact
1751 atttcacgga gtctcgcact ggcgatgaca acataacatg ggagaatgac gacaaaacgg gttcactggt
1821 gtgggcaggc gatacttact ggcgtatctc cgagcgttgg ggattgcgtg gcgggattca gtacgataca
1891 cgtctggata acgtagcgac cagtaactcc agcattgaat accgtcggga tgaagaccgt ctggtacagc
1961 tgaattaccg ttacgccagc ccggaatata ttcaggctac gctgcctaag tactattcca ctgctgagca
2031 atataagaat ggtatttcgc aggtaggtgc tgtcgccagc tggccaattg ccgatcgttg gtccattgtt
2101 ggggcctact actacgacac caatgctaac aagcaagccg actctatgtt aggtgtgcaa tacagctcct
2171 gctgctatgc aattcgcgtc ggttacgagc ggaagctgaa cggttgggat aacgataaac aacatgcggt
2241 atatgacaac gcaatcggct ttaacatcga acttcgcggc ctgagctcca actacggtct gggtacgcaa
2311 gagatgctgc gttcgaacat tctgccgtat caaaacactt tgtgatttgt tgatttacca cgtaatccgc
2381 agtgcggtta attgaaatgg aaaaagtatg aagaactgga aaacgctgct tctcggtatc gccatgatcg
2451 cgaat
|
