|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Deletion
|
OCR35
(D)
,
OCR35-1
(D)
,
OCR35-4
(D)
,
OCR35-5
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
arfB
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
arfB
Search strains by all related name:
arfB b0191 ECK0191 JW0187 yaeJ
|
General information (Go to Linear View: )
|
|
Gene Name
|
arfB
|
|
Alternative name
|
b0191,ECK0191,JW0187,yaeJ
|
|
Location, Length
|
214,833 - 215,255
(
+
)
;
4.63
min
;
423
(bp) ,
140
(aa)
|
|
Product
|
alternative stalled-ribosome rescue factor B; peptidyl-tRNA hydrolase, ribosome-attached
|
|
Operon Name
|
yaeQJ-nlpE
|
|
Note
|
|
|
Function
|
|
|
Gene Ontology
|
GO:0003747
;
translation release factor activity ( yaeJ )
GO:0006415
;
translational termination ( yaeJ )
|
|
PID
|
1786389
|
EC number
(KEGG Pathway)
|
|
|
SWISS-PROT
(
Show details
[
2
more]
)
|
Entry name(Acc.no)
|
YAEJ_ECOLI
(
P40711
)
|
|
- Protein name
|
Hypothetical protein yaeJ.
|
|
- Synonyms
|
|
|
- Gene name
|
Name=yaeJ; OrderedLocusNames=b0191;
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
yaeJ
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
Chain A, Solution Structure Of A Putative Peptidyl-Trna Hydrolase Domain In A Mouse Hypothetical Protein
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
Hypothetical protein yaeJ
|
|
PSI-BLAST
|
Peptide chain release factor 1
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
hypothetical protein b0191 [Escherichia coli K12]
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
ASN_GLYCOSYLATION
CAMP_PHOSPHO_SITE
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
MYRISTYL
RF_PROK_I
|
| Sequences |
Amino acid
FASTA format
|
0001 MIVISRHVAI PDGELEITAI RAQGAGGQHV NKTSTAIHLR FDIRASSLPE YYKERLLAAS HHLISSDGVI
0071 VIKAQEYRSQ ELNREAALAR LVAMIKELTT EKKARRPTRP TRASKERRLA SKAQKSSVKA MRGKVRSGRE
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 GTACCATGAC GCTGCAGGCA ACGATTCAGG
-070 ATGGCGTGAT CTGGTTATCG GATGATAAGA ATAATCTGGA AGTGAACTTA ACCGCCTGGC AACAACCTTC
0001 atgattgtga tttcccgaca tgttgctatt cccgatggtg agcttgagat caccgccatt cgtgcgcagg
0071 gcgcgggcgg gcagcatgtt aataagacct caacggctat tcatctgcgt tttgacattc gggcgtccag
0141 cctgccagag tattacaaag agcgtctgct cgccgccagc catcatttga tcagcagtga tggcgtgatt
0211 gtcattaagg cacaggaata ccgcagtcag gaactgaacc gcgaagcagc tctggcccgg ctggtggcta
0281 tgattaaaga attaacaaca gaaaaaaaag cccgacgacc cacgcggccc acccgtgcat cgaaagagcg
0351 caggctggca tcgaaagcac aaaaatcaag cgtgaaggcg atgcgcggca aagtgcgcag cggtcgggaa
0421 taaAAAGAAG GAATGGATGG TGAAAAAAGC GATAGTGACA GCGATGGCTG TAATCAGCCT CTTTACTCTG
0491 ATGGGATGTA ATAATCGGGC CGAAGTCGAT ACG
|
