|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Deletion
|
LD3-18-1
(LD)
,
DE(relA-argA)216
,
OCL44,45-6
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
gcvB
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
gcvB
Search strains by all related name:
gcvB b4443 ECK2804 IS145 JWR0247 psrA11
|
General information (Go to Linear View: )
|
|
misc_RNA Name
|
gcvB
|
|
Alternative name
|
b4443,ECK2804,IS145,JWR0247,psrA11
|
|
Location, Length
|
2,940,718 - 2,940,923
(
+
)
;
63.38
min
;
206
(bp) ,
|
|
Product
|
sRNA antisense regulator represses oppA, dppA, gltI and livJ expression, Hfq-dependent
|
|
Operon Name
|
gcvB
|
|
Note
|
regulated by gcvA and gcvR
|
|
Function
|
represses oppA, dppA, gltI, and livJ expression; mechanism unknown
|
|
Gene Ontology
|
|
|
PID
|
|
EC number
(KEGG Pathway)
|
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
|
|
PSI-BLAST
|
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
|
| Sequences |
Nucleotide
FASTA format
View sequence in neighbor 100bp
|
0001 acttcctgag ccggaacgaa aagttttatc ggaatgcgtg ttctggtgaa cttttggctt acggttgtga
0071 tgttgtgttg ttgtgtttgc aattggtctg cgattcagac catggtagca aagctacctt ttttcacttc
0141 ctgtacattt accctgtctg tccatagtga ttaatgtagc accgcctaat tgcggtgctt tttttt
|
