|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Deletion
|
20
(LD)
,
DE(PLK1608)
,
OCR70,L90-5 (LD 20-1_P/O)
(D)
,
OCR70,L90-6 (LD 20-1_P/O & 20-2TC)
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
mcaS
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
mcaS
Search strains by all related name:
mcaS b4426 ECK1336 IS061 isrA JWR0233
|
General information (Go to Linear View: )
|
|
misc_RNA Name
|
mcaS
|
|
Alternative name
|
b4426,ECK1336,IS061,isrA,JWR0233
|
|
Location, Length
|
1,403,680 - 1,403,775
(
-
)
;
30.25
min
;
96
(bp) ,
|
|
Product
|
motility and biofilm regulator sRNA
|
|
Operon Name
|
isrA
|
|
Note
|
identified in a large scale screen
|
|
Function
|
represses csgD, activates flhD, regulates pgaA
|
|
Gene Ontology
|
|
|
PID
|
|
EC number
(KEGG Pathway)
|
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
|
|
PSI-BLAST
|
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
|
| Sequences |
Nucleotide
FASTA format
View sequence in neighbor 100bp
|
0001 accggcgcag aggagacaat gccggattta agacgcggat gcactgctgt gtgtactgta gagtctggcg
0071 gatgtcgaca gactctattt ttttat
|
