|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
Escherichia coli and Salmonella, Cellular and Molecular Biology Second Edition. ASM Press. 1996
Neidhart, F.C.
|
|
|
Deletion
|
OCR67
(D)
,
OCR67-3
(D)
,
OCR67-5
(D)
,
OCR68
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
rttR
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
rttR
Search strains by all related name:
rttR b1229 b4425 ECK1223 JWR0232 rtT rtV1 tpr
|
General information (Go to Linear View: )
|
|
misc_RNA Name
|
rttR
|
|
Alternative name
|
b1229,b4425,ECK1223,JWR0232,rtT,rtV1,tpr
|
|
Location, Length
|
1,286,289 - 1,286,459
(
-
)
;
27.72
min
;
171
(bp) ,
|
|
Product
|
rtT sRNA, processed from tyrT transcript
|
|
Operon Name
|
rttR
|
|
Note
|
rtT RNA may modulate the stringent response; released from primary tyrT transcript during tRNA processing; encodes putative Tpr protein
|
|
Function
|
|
|
Gene Ontology
|
|
|
PID
|
|
EC number
(KEGG Pathway)
|
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
tpr
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
|
|
PSI-BLAST
|
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
PKC_PHOSPHO_SITE
|
|
MMBR References
|
Cell. 1981;26(3 Pt 1):299-304.
An E. coli gene coding for a protamine-like protein.
Altman S, Model P, Dixon GH, Wosnick NA.
(
7034959
)
|
| Sequences |
Nucleotide
FASTA format
View sequence in neighbor 100bp
|
0001 caaaagtccc tgaacttccc aacgaatccg caattaaata ttctgcccat gcggggaagg atgagaagct
0071 tcgaccaagg ttcgactcga gcgccagcga gagagcgttg ccgcaggcaa cgacccgaag ggcgaagcgc
0141 gcagcgctga gtaatccttc ccccaccacc a
|
