|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Deletion
|
OCR10,11-11 (AK1-16 / BK2-16)
(D)
,
OCR10,11-16 (BK5-16 / AK7-16)
(D)
,
OCR10,11-2
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
rrfB
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
rrfB
Search strains by all related name:
rrfB b3971 ECK3963 JWR0102
|
General information (Go to Linear View: )
|
|
rRNA Name
|
rrfB
|
|
Alternative name
|
b3971,ECK3963,JWR0102
|
|
Location, Length
|
4,169,660 - 4,169,779
(
+
)
;
89.87
min
;
120
(bp) ,
|
|
Product
|
5S ribosomal RNA of rrnB operon
|
|
Operon Name
|
rrsB-gltT-rrlB-rrfB
|
|
Note
|
|
|
Function
|
|
|
Gene Ontology
|
|
|
PID
|
|
EC number
(KEGG Pathway)
|
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
|
|
PSI-BLAST
|
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
|
|
MMBR References
|
FEBS Lett. 1996;394(1):71-5.
5S rRNA sugar-phosphate backbone protection in complexes with specific ribosomal proteins.
Shpanchenko OV, Zvereva MI, Dontsova OA, Nierhaus KH, Bogdanov AA.
(
8925931
)
|
Plasmid. 1981;6(1):112-8.
Construction and fine mapping of recombinant plasmids containing the rrnB ribosomal RNA operon of E. coli.
Brosius J, Ullrich A, Raker MA, Gray A, Dull TJ, Gutell RR, Noller HF.
(
7025054
)
|
J Mol Biol. 1981;148(2):107-27.
Gene organization and primary structure of a ribosomal RNA operon from Escherichia coli.
Brosius J, Dull TJ, Sleeter DD, Noller HF.
(
7028991
)
|
| Sequences |
Nucleotide
FASTA format
View sequence in neighbor 100bp
|
0001 tgcctggcgg cagtagcgcg gtggtcccac ctgaccccat gccgaactca gaagtgaaac gccgtagcgc
0071 cgatggtagt gtggggtctc cccatgcgag agtagggaac tgccaggcat
|
