|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Deletion
|
28
(LD)
,
OCR42,43-3 (LD 28B_CRS)
(D)
,
OCR42,43-4 (LD 28B_P/O)
(D)
,
OCR43
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
ylbF
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
ylbF
Search strains by all related name:
ylbF b0520 ECK0513 JW0509 o271 o271c
|
General information (Go to Linear View: )
|
|
Gene Name
|
ylbF
|
|
Alternative name
|
b0520,ECK0513,JW0509,o271,o271c
|
|
Location, Length
|
548,850 - 549,665
(
+
)
;
11.83
min
;
816
(bp) ,
271
(aa)
|
|
Product
|
hypothetical protein
|
|
Operon Name
|
fdrA-ylbE_1E_2F-ybcF
|
|
Note
|
putative carboxylase
|
|
Function
|
putative enzyme; Not classified
|
|
Gene Ontology
|
|
|
PID
|
1786731
|
EC number
(KEGG Pathway)
|
|
|
SWISS-PROT
(
Show simple
)
|
Entry name(Acc.no)
|
YLBF_ECOLI
(
P77518
)
|
|
- Protein name
|
Hypothetical protein ylbF.
|
|
- Synonyms
|
|
|
- Gene name
|
Name=ylbF; OrderedLocusNames=b0520, z0675, ECs0582;
|
|
- Comments
|
SIMILARITY:To E.coli yahG.
CAUTION:Ref.1 sequence differs from that shown due to a frameshift in position 85.
|
|
Entry name(Acc.no)
|
Q8FK52
(
Q8FK52
)
|
|
- Protein name
|
Hypothetical protein ylbF.
|
|
- Synonyms
|
|
|
- Gene name
|
Name=ylbF; OrderedLocusNames=c0634;
|
|
- Comments
|
FUNCTION:PPIases accelerate the folding of proteins (By similarity).
CATALYTIC ACTIVITY:Peptidylproline (omega=180) = peptidylproline (omega=0).
SIMILARITY:Belongs to the cyclophilin-type PPIase family.
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
ylbF
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
Chain A, X-Ray Crystal Structure Of Phzg From Pseudomonas Aeruginosa
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
Hypothetical protein ylbF
|
|
PSI-BLAST
|
Hypothetical protein ylbF
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
putative carboxylase [Escherichia coli O157:H7 EDL933]
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
GLYCOSAMINOGLYCAN
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
MYRISTYL
|
| Sequences |
Amino acid
FASTA format
|
0001 MTIIHPLLAS SSAPNYRQSW RLAGVWRRAI NLMTESGELL TLHRQGSGFG PGGWVLRRAQ FDALCGGLCG
0071 NERPQVVAQG IRLGRFTVKQ PQRYCLLRIT PPAHPQPLAA AWMQRAEETG LFGPLALAAS DPLPAELRQF
0141 RHCFQAALNG VKTDWRHWLG KGPGLTPSHD DTLSGMLLAA WYYGALDARS GRPFFACSDN LQLVTTAVSV
0211 SYLRYAAQGY FASPLLHFVH ALSCPKRTAV AIDSLLALGH TSGADTLLGF WLGQQLLQGK P
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 GGGCAGATTG GCGCAGGCAC CGTGCGGGCA
-070 CCGCTGGCGT GCTTTGAACA GGCGCTGGAA GCACTGGCTG AAAGCATGGG TATTGGTTGA GGAACGCGCA
0001 atgacgatca tccatcctct gcttgccagt agtagcgcac cgaattatcg ccagtcctgg cggttagcgg
0071 gagtgtggcg gcgggcgatt aacctgatga cggaaagcgg cgaactgtta acgttgcatc gtcagggtag
0141 tggtttcggc cccggaggat gggtgcttcg ccgtgcgcaa ttcgatgcgt tatgcggtgg attatgcggc
0211 aatgaacgac cacaggttgt ggctcaaggg attcgcctcg ggcgtttcac ggttaaacag ccacagcgtt
0281 attgtttgct gcgtattacg ccgcctgcgc atcctcaacc acttgcagct gcatggatgc aacgcgcgga
0351 ggaaaccggg cttttcgggc cactggcgtt ggcggcaagc gatccgctgc ctgctgagtt acgccagttt
0421 cgtcactgtt ttcaggccgc gctcaatggc gttaagaccg actggcggca ctggctgggt aaaggccccg
0491 gattaacgcc gagtcatgat gacacgctga gcggaatgct gctggcggcc tggtattatg gcgctttaga
0561 tgcgcgctcc ggtcgtccgt tttttgcctg ttccgacaat ctgcaactcg ttaccacagc ggtgagcgtc
0631 agttatttac gttatgccgc gcaaggatat ttcgcctcgc cactcctgca ctttgttcat gctctgagtt
0701 gcccgaaacg taccgctgtt gcgattgatt cgctgctggc gctggggcat acgtcagggg cagatacgct
0771 gctggggttc tggcttggcc aacaattatt acaaggaaaa ccatgaAAAC ACTGGTTGTG GCTCTTGGGG
0841 GCAACGCCTT ACTCCAGCGC GGTGAGGCGC TGACGGCAGA AAATCAATAT CGCAATATCG CCAGTGCTGT
0911 ACCCGC
|
