|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Deletion
|
28
(LD)
,
OCR42
(D)
,
OCR42,43-3 (LD 28B_CRS)
(D)
,
OCR42,43-4 (LD 28B_P/O)
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
ybbA
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
ybbA
Search strains by all related name:
ybbA b0495 ECK0489 JW0484
|
General information (Go to Linear View: )
|
|
Gene Name
|
ybbA
|
|
Alternative name
|
b0495,ECK0489,JW0484
|
|
Location, Length
|
518,957 - 519,643
(
+
)
;
11.19
min
;
687
(bp) ,
228
(aa)
|
|
Product
|
putative transporter subunit: ATP-binding component of ABC superfamily
|
|
Operon Name
|
ybbAP
|
|
Note
|
putative ATP-binding component of a transport system; GO_component: GO:0005737 - cytoplasm
|
|
Function
|
putative transport; Not classified
|
|
Gene Ontology
|
GO:0000166
;
nucleotide binding ( ybbA )
GO:0005524
;
ATP binding ( ybbA )
GO:0005525
;
GTP binding ( ybbA )
GO:0006810
;
transport ( ybbA )
GO:0016887
;
ATPase activity ( ybbA )
GO:0017111
;
nucleoside-triphosphatase activity ( ybbA )
|
|
PID
|
1786703
|
EC number
(KEGG Pathway)
|
|
|
SWISS-PROT
(
Show simple
)
|
Entry name(Acc.no)
|
YBBA_ECOLI
(
P31219
;
P77322
)
|
|
- Protein name
|
Hypothetical ABC transporter ATP-binding protein ybbA.
|
|
- Synonyms
|
|
|
- Gene name
|
Name=ybbA; OrderedLocusNames=b0495, z0648, ECs0557, SF0439, S0447;
|
|
- Comments
|
SIMILARITY:Belongs to the ABC transporter family. LolD subfamily.
|
|
Entry name(Acc.no)
|
Q8FK69
(
Q8FK69
)
|
|
- Protein name
|
Hypothetical ABC transporter ATP-binding protein ybbA.
|
|
- Synonyms
|
|
|
- Gene name
|
Name=ybbA; OrderedLocusNames=c0616;
|
|
- Comments
|
SIMILARITY:Belongs to the ABC transporter family.
|
|
Entry name(Acc.no)
|
Q9JMT7
(
Q9JMT7
)
|
|
- Protein name
|
YbbA protein.
|
|
- Synonyms
|
|
|
- Gene name
|
Name=ybbA; OrderedLocusNames=ECOK12F012;
|
|
- Comments
|
SUBCELLULAR LOCATION:Outer membrane (By similarity).
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
ybbA
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
Chain 1, Malk
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
Hypothetical ABC transporter ATP-binding protein ybbA
|
|
PSI-BLAST
|
Methionine import ATP-binding protein metN
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
putative ATP-binding component of a transport system [Escherichia coli O157:H7 EDL933]
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
GLYCOSAMINOGLYCAN
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
MYRISTYL
AMIDATION
ATP_GTP_A
ABC_TRANSPORTER
|
| Sequences |
Amino acid
FASTA format
|
0001 MPAENIVEVH HLKKSVGQGE HELSILTGVE LVVKRGETIA LVGESGSGKS TLLAILAGLD DGSSGEVSLV
0071 GQPLHNMDEE ARAKLRAKHV GFVFQSFMLI PTLNALENVE LPALLRGESS AESRNGAKAL LEQLGLGKRL
0141 DHLPAQLSGG EQQRVALARA FNGRPDVLFA DEPTGNLDRQ TGDKIADLLF SLNREHGTTL IMVTHDLQLA
0211 ARCDRCLRLV NGQLQEEA
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 CAGACATTCG ATACCCGGCG CTCAGGCTAT
-070 CACCCAGAAT CAATAACGTG TCCGCTGCGG CGGCACGGAA GGTTAACAGG ACCAGGAACA GGAAGGGCAA
0001 atgccagcgg aaaacattgt tgaagttcat catcttaaga agtccgtcgg tcagggggag catgaactct
0071 ccatcctcac cggagttgag ctggttgtca aacgtggcga gaccatcgca ctggtgggcg agtcgggatc
0141 gggtaagtca accttgctgg cgatcctcgc cgggcttgat gacggcagca gtggcgaagt gagtctggtg
0211 ggacaaccgc tacataatat ggacgaagaa gcgcgggcaa agttgcgcgc gaagcacgtc ggctttgttt
0281 ttcagtcatt tatgttaatt cctaccctta acgcgctgga aaacgtcgag cttccggctc tgctgcgcgg
0351 tgagagtagc gcggaaagtc gtaacggggc gaaagcgttg ctcgaacagt tagggctggg taaacgtctg
0421 gatcatcttc cggcacagct ttccggcggt gaacagcaac gagtggcgct ggcacgagcc tttaatggtc
0491 gacctgatgt gctgtttgcc gacgaaccca ccggcaacct tgaccgccag acgggcgata aaattgccga
0561 cctgctgttt tccctcaacc gtgaacatgg caccacgttg attatggtga cccacgacct gcaactggcg
0631 gcacgctgcg accgctgctt acggctggtg aacgggcagt tgcaggagga agcatgaTTG CACGTTGGTT
0701 CTGGCGCGAA TGGCGTTCGC CGTCGCTATT AATTGTCTGG CTGGCGCTAA GCCTGGCGGT GGCCTGCGTG
0771 CTGGCGCTGG GCAATAT
|
