|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
Escherichia coli and Salmonella, Cellular and Molecular Biology Second Edition. ASM Press. 1996
Neidhart, F.C.
|
|
|
Deletion
|
OCL03
(D)
,
DE(OC2)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
tnaC
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
tnaC
Search strains by all related name:
tnaC b3707 ECK3700 JW3685 o24 tnaL
|
General information (Go to Linear View: )
|
|
Gene Name
|
tnaC
|
|
Alternative name
|
b3707,ECK3700,JW3685,o24,tnaL
|
|
Location, Length
|
3,886,458 - 3,886,532
(
+
)
;
83.77
min
;
75
(bp) ,
24
(aa)
|
|
Product
|
tryptophanase leader peptide
|
|
Operon Name
|
tnaCAB
|
|
Note
|
GO_process: GO:0009063 - cellular amino acid catabolic process
|
|
Function
|
leader; Degradation of small molecules: Amino acids
|
|
Gene Ontology
|
GO:0031554
;
regulation of transcription termination ( tnaL )
GO:0031556
;
ribosome-mediated transcriptional attenuation ( tnaL )
|
|
PID
|
1790143
|
EC number
(KEGG Pathway)
|
|
|
SWISS-PROT
(
Show simple
)
|
Entry name(Acc.no)
|
LPTN_ECOLI
(
P09408
)
|
|
- Protein name
|
Tryptophanase leader peptide.
|
|
- Synonyms
|
|
|
- Gene name
|
OrderedLocusNames=b3707, c5499, z5202, ECs4644;
|
|
- Comments
|
CAUTION:This sequence, according to the EcoSeq database (K. Rudd) is probably not a real protein; therefore this entry will probably be deleted in future releases.
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
tnaC
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
Tryptophanase leader peptide
|
|
PSI-BLAST
|
Tryptophanase leader peptide
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
tryptophanase leader peptide [Escherichia coli O157:H7 EDL933]
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
PKC_PHOSPHO_SITE
|
| Sequences |
Amino acid
FASTA format
|
0001 MNILHICVTS KWFNIDNKIV DHRP
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 CCGAACGATT GTGATTCGAT TCACATTTAA
-070 ACAATTTCAG AATAGACAAA AACTCTGAGT GTAATAATGT AGCCTCGTGT CTTGCGAGGA TAAGTGCATT
0001 atgaatatct tacatatatg tgtgacctca aaatggttca atattgacaa caaaattgtc gatcaccgcc
0071 cttgaTTTGC CCTTCTGTAG CCATCACCAG AGCCAAACCG ATTAGATTCA ATGTGATCTA TTTGTTTGCT
0141 ATATCTTAAT TTTGCCTTTT GCAAAGGTCA TCTCT
|
