|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
J Bacteriol. 1993;175(5):1452-6.
The periplasmic dipeptide permease system transports 5-aminolevulinic acid in Escherichia coli.
Verkamp E, Backman VM, Bjornsson JM, Soll D, Eggertsson G.
(
8444807
)
|
|
|
Deletion
|
2-1
(LD)
,
OCL10,16-3 (LD 2-1'_CRS)
(D)
,
OCL10,16-4 (LD 2-1'_P/O)
(D)
,
OCL13
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
dppC
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
dppC
Search strains by all related name:
dppC b3542 ECK3529 f300 JW3511
|
General information (Go to Linear View: )
|
|
Gene Name
|
dppC
|
|
Alternative name
|
b3542,ECK3529,f300,JW3511
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|
Location, Length
|
3,701,882 - 3,702,784
(
-
)
;
79.79
min
;
903
(bp) ,
300
(aa)
|
|
Product
|
dipeptide/heme transporter
|
|
Operon Name
|
dppABCDF
|
|
Note
|
dipeptide transport system permease protein 2; membrane component of ABC superfamily; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane
|
|
Function
|
transport; Protein, peptide secretion
|
|
Gene Ontology
|
GO:0005215
;
transporter activity ( dppC )
GO:0005886
;
plasma membrane ( dppC )
GO:0006810
;
transport ( dppC )
GO:0006857
;
oligopeptide transport ( dppC )
GO:0015031
;
protein transport ( dppC )
GO:0015198
;
oligopeptide transporter activity ( dppC )
GO:0016020
;
membrane ( dppC )
GO:0016021
;
integral to membrane ( dppC )
|
|
PID
|
1789964
|
EC number
(KEGG Pathway)
|
|
|
SWISS-PROT
(
Show simple
)
|
Entry name(Acc.no)
|
DPPC_ECOLI
(
P37315
)
|
|
- Protein name
|
Dipeptide transport system permease protein dppC.
|
|
- Synonyms
|
|
|
- Gene name
|
Name=dppC; OrderedLocusNames=b3542, c4357, z4959, ECs4422;
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- Comments
|
FUNCTION:Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane.
SUBCELLULAR LOCATION:Integral membrane protein. Inner membrane.
SIMILARITY:Belongs to the binding-protein-dependent transport system permease family. OppBC subfamily.
|
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Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
dppC
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
Dipeptide transport system permease protein dppC
|
|
PSI-BLAST
|
Dipeptide transport system permease protein dppC
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
dipeptide transport system permease protein 2 [Escherichia coli O157:H7 EDL933]
|
|
Pfam 28.0
(database updated :
2015-05
)
|
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Pfam
|
|
|
PROSITE
|
|
PROSITE
|
MYRISTYL
BPD_TRANSP_INN_MEMBR
|
|
MMBR References
|
Mol Microbiol. 1991;5(5):1035-47.
Peptide transport and chemotaxis in Escherichia coli and Salmonella typhimurium: characterization of the dipeptide permease (Dpp) and the dipeptide-binding protein.
Abouhamad WN, Manson M, Gibson MM, Higgins CF.
(
1956284
)
|
FEMS Microbiol Lett. 1992;79(1-3):183-90.
Expression of periplasmic binding proteins for peptide transport is subject to negative regulation by phosphate limitation in Escherichia coli.
Smith MW, Payne JW.
(
1478454
)
|
J Bacteriol. 1993;175:1452-1456
The periplasmic dipeptide permease system transports 5-aminolevulinic acid in Escherichia coli.
Verkamp, E., V. M. Backman, J. M. Bjornsson, D. Soll, and G. Eggertsson.
|
| Sequences |
Amino acid
FASTA format
|
0001 MSQVTENKVI SAPVPMTPLQ EFWHYFKRNK GAVVGLVYVV IVLFIAIFAN WIAPYNPAEQ FRDALLAPPA
0071 WQEGGSMAHL LGTDDVGRDV LSRLMYGARL SLLVGCLVVV LSLIMGVILG LIAGYFGGLV DNIIMRVVDI
0141 MLALPSLLLA LVLVAIFGPS IGNAALALTF VALPHYVRLT RAAVLVEVNR DYVTASRVAG AGAMRQMFIN
0211 IFPNCLAPLI VQASLGFSNA ILDMAALGFL GMGAQPPTPE WGTMLSDVLQ FAQSAWWVVT FPGLAILLTV
0281 LAFNLMGDGL RDALDPKLKQ
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 attgctggtg gcgacgatga ttatcctcgt
-070 caacttgctg gtcgatctgc tgtacggcgt ggtgaacccg cgtattcgtc ataagaagta aggggacatc
0001 atgtcacagg ttactgaaaa taaagtgatt agcgcaccgg tgccgatgac cccgttacag gagttctggc
0071 actattttaa acgcaacaaa ggcgcggtcg tcgggctggt ttacgtcgtc atcgtgctgt tcatcgcgat
0141 ctttgccaac tggattgcac cctataaccc ggcggaacag ttccgcgatg cactgctcgc cccgccagcc
0211 tggcaggaag gcggcagcat ggcgcacttg ctgggcaccg atgacgtagg ccgtgatgtg ctgtcgcgcc
0281 tgatgtacgg tgcgcgcctg tcgctgctgg ttggctgtct ggtagttgtg ttatcgctga ttatgggcgt
0351 tattctcggc ctgatcgccg gttactttgg cggcctggtc gataacatca ttatgcgcgt ggtcgatatc
0421 atgctggcgc tgccaagtct gctgctggcg ctggtgctgg tggcaatttt cggcccgtcg attggtaacg
0491 ccgcgctggc actgaccttc gttgccttgc cgcactatgt gcgcttaacc cgcgccgccg tgctggtgga
0561 agttaaccgc gattacgtca ccgcgtctcg cgtggcgggt gccggggcga tgcgtcagat gtttattaac
0631 atcttcccga actgccttgc gccgctgatt gttcaggcgt cgctcggttt ctctaacgcc attctcgata
0701 tggctgctct tggtttcctc ggcatggggg cacagccgcc aacgcctgag tggggcacca tgctctccga
0771 cgtgttgcag ttcgcgcaaa gcgcctggtg ggtcgtgacc ttcccgggtc tggcgatcct gctgacggtg
0841 ctggcattta acctgatggg tgacggtctg cgtgacgcgc tcgatcccaa actgaagcag taagaggttc
0911 gagatggcgt tattaaatgt agataaatta tcggtgcatt tcggcgacga aagcgcgccg ttccgcgccg
0981 tagaccgcat cagctacagc gta
|
