|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Deletion
|
OCL46
(D)
,
OCL46-2
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
casE
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
casE
Search strains by all related name:
casE b2756 cas6e cse3 ECK2751 f199 JW2726 ygcH
|
General information (Go to Linear View: )
|
|
Gene Name
|
casE
|
|
Alternative name
|
b2756,cas6e,cse3,ECK2751,f199,JW2726,ygcH
|
|
Location, Length
|
2,877,810 - 2,878,409
(
-
)
;
62.03
min
;
600
(bp) ,
199
(aa)
|
|
Product
|
CRISPR RNA precursor cleavage enzyme; CRISP RNA (crRNA) containing Cascade antiviral complex protein
|
|
Operon Name
|
casABCDE12
|
|
Note
|
|
|
Function
|
|
|
Gene Ontology
|
|
|
PID
|
1789114
|
EC number
(KEGG Pathway)
|
|
|
SWISS-PROT
(
Show simple
)
|
Entry name(Acc.no)
|
YGCH_ECOLI
(
Q46897
)
|
|
- Protein name
|
Hypothetical protein ygcH.
|
|
- Synonyms
|
|
|
- Gene name
|
Name=ygcH; OrderedLocusNames=b2756;
|
|
- Comments
|
SUBCELLULAR LOCATION:Integral membrane protein (Potential).
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
ygcH
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
Chain A, Crystal Structure Of A Crispr-Associated Protein From Thermus Thermophilus
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
Hypothetical protein ygcH
|
|
PSI-BLAST
|
Hypothetical protein ygcH
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
hypothetical protein b2756 [Escherichia coli K12]
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
GLYCOSAMINOGLYCAN
CAMP_PHOSPHO_SITE
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
MYRISTYL
|
| Sequences |
Amino acid
FASTA format
|
0001 MYLSKVIIAR AWSRDLYQLH QGLWHLFPNR PDAARDFLFH VEKRNTPEGC HVLLQSAQMP VSTAVATVIK
0071 TKQVEFQLQV GVPLYFRLRA NPIKTILDNQ KRLDSKGNIK RCRVPLIKEA EQIAWLQRKL GNAARVEDVH
0141 PISERPQYFS GDGKSGKIQT VCFEGVLTIN DAPALIDLVQ QGIGPAKSMG CGLLSLAPL
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 acagggcatc atttaaaatt tacggcgcgc
-070 gacgaaccga tgatcacctt gcctcgacaa tttgcttccc gagaatggta tgtgattaaa ggaggtatgg
0001 atgtatctca gtaaagtcat cattgccagg gcctggagca gggatcttta ccaacttcac cagggattat
0071 ggcatttatt tccaaacaga ccggatgctg ctcgtgattt tctttttcat gttgagaagc gaaacacacc
0141 agaaggctgt catgttttat tgcagtcagc gcaaatgcct gtttcaactg ccgttgcgac agtcattaaa
0211 actaaacagg ttgaatttca acttcaggtt ggtgttccac tctattttcg gcttcgggca aatccgatca
0281 aaactattct cgacaatcaa aagcgcctgg acagtaaagg gaatattaaa cgctgtcggg ttccgttaat
0351 aaaagaagca gaacaaatcg cgtggttgca acgtaaattg ggcaatgcgg cgcgcgttga agatgtgcat
0421 cccatatcgg aacggccaca gtatttttct ggtgatggta aaagtggaaa gatccaaacg gtttgctttg
0491 aaggtgtgct caccatcaac gacgcgccag cgttaataga tcttgtacag caaggtattg ggccagctaa
0561 atcgatggga tgtggcttgc tatctttggc tccactgtga ttgaggtgta ataaaatgac ctggcttccc
0631 cttaatccca ttccactcaa agatcgcgtc tccatgatct ttctgcaata tgggcagatc gatgtaatag
|
