|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Deletion
|
21
(LD)
,
OCL47
(D)
,
OCL47,48-1 (LD 21_CRS)
(D)
,
OCL47,48-2 (LD 21_P/O)
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
ygbL
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
ygbL
Search strains by all related name:
ygbL b2738 ECK2733 JW2708 o212 o212a
|
General information (Go to Linear View: )
|
|
Gene Name
|
ygbL
|
|
Alternative name
|
b2738,ECK2733,JW2708,o212,o212a
|
|
Location, Length
|
2,861,615 - 2,862,253
(
+
)
;
61.68
min
;
639
(bp) ,
212
(aa)
|
|
Product
|
putative class II aldolase
|
|
Operon Name
|
ygbLM
|
|
Note
|
putative epimerase/aldolase
|
|
Function
|
putative enzyme; Not classified
|
|
Gene Ontology
|
GO:0008270
;
zinc ion binding ( ygbL )
GO:0046872
;
metal ion binding ( ygbL )
|
|
PID
|
1789094
|
EC number
(KEGG Pathway)
|
|
|
SWISS-PROT
(
Show simple
)
|
Entry name(Acc.no)
|
YGBL_ECOLI
(
Q46890
)
|
|
- Protein name
|
Hypothetical aldolase class II protein ygbL.
|
|
- Synonyms
|
|
|
- Gene name
|
Name=ygbL; OrderedLocusNames=b2738;
|
|
- Comments
|
COFACTOR:Binds 1 zinc ion per subunit (Potential).
SIMILARITY:Belongs to the aldolase class II family. AraD/fucA subfamily.
|
|
Entry name(Acc.no)
|
Q8FEK8
(
Q8FEK8
)
|
|
- Protein name
|
Hypothetical aldolase class II protein ygbL.
|
|
- Synonyms
|
|
|
- Gene name
|
Name=ygbL; OrderedLocusNames=c3299;
|
|
- Comments
|
FUNCTION:Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released (By similarity).
SIMILARITY:Belongs to the sigma-70 factor family.
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
ygbL
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
Chain P, L-Fuculose-1-Phosphate Aldolase From Escherichia Coli Mutant F131a
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
Putative aldolase class 2 protein ygbL
|
|
PSI-BLAST
|
Putative aldolase class 2 protein ygbL
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
hypothetical protein b2738 [Escherichia coli K12]
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
ASN_GLYCOSYLATION
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
MYRISTYL
PROKAR_LIPOPROTEIN
|
| Sequences |
Amino acid
FASTA format
|
0001 MSDFAKVEQS LREEMTRIAS SFFQRGYATG SAGNLSLLLP DGNLLATPTG SCLGNLDPQR LSKVAADGEW
0071 LSGDKPSKEV LFHLALYRNN PRCKAVVHLH STWSTALSCL QGLDSSNVIR PFTPYVVMRM GNVPLVPYYR
0141 PGDKRIAQDL AELAADNQAF LLANHGPVVC GESLQEAANN MEELEETAKL IFILGDRPIR YLTAGEIAEL
0211 RS
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 CGTGGGTAAA CGCACTGGAT AAGCCTGTCT
-070 CACTCGCCCT TAAATCTGGC AACTTCGGTG ATGACGCCTT TTTTTCACGA GCCCAAAGAG AGTTTTTATC
0001 atgagcgatt tcgcaaaagt agagcagtct ttgcgagagg agatgacgcg gattgccagt tcattctttc
0071 agcgcggcta tgcaaccggt tcggctggca atctgtcgct gcttttacct gacgggaatt tactggcgac
0141 accgacaggt tcatgcctgg gcaatctcga tccgcagcgg ctttccaaag tcgccgcgga tggcgaatgg
0211 ttaagtggtg acaaaccctc gaaagaggtg ctctttcatc tggcgctgta tcgcaacaat ccgcgctgta
0281 aagcggtggt gcatttgcac agcacatggt cgacggcgct ttcctgcctg caagggctgg acagcagcaa
0351 cgttattcgt ccgttcacac catacgtggt gatgcggatg ggaaatgtcc cgctggtgcc ttattaccga
0421 ccgggcgata aacgcatcgc acaggatctg gcggaactgg cagcagacaa tcaggctttt ttactggcaa
0491 atcatggccc agtggtttgc ggtgaaagcc tgcaagaagc cgccaacaat atggaagagc tggaggaaac
0561 ggcaaagctg atttttattc tcggtgaccg cccgatccgt tatctgaccg caggtgaaat tgcggaatta
0631 aggagttaaT GCAATGCCTC GTTTTGCAGC TAATTTATCC ATGATGTTCA CCGAAGTGCC TTTTATTGAA
0701 CGCTTCGCCG CAGCGCGAAA AGCCGGGTTC GATGCTGTG
|
