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PEC Original Annotations
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Essentiality
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Class
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essential
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References (PMID)
|
EMBO J. 2001;20(15):4253-62.
Hda, a novel DnaA-related protein, regulates the replication cycle in Escherichia coli.
Kato J, Katayama T.
(
11483528
)
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Deletion
|
OCL57,58-1
(D)
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Related gene (W3110 PEC)
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Gene Search
|
Search MG1655 PEC by gene name:
hda
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Related strains
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Strains Search
|
Search strains by gene name:
hda
Search strains by all related name:
hda b2496 ECK2492 f248 f248c idaB JW5397 yfgE
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General information (Go to Linear View: )
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Gene Name
|
hda
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Alternative name
|
b2496,ECK2492,f248,f248c,idaB,JW5397,yfgE
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Location, Length
|
2,616,097 - 2,616,798
(
-
)
;
56.39
min
;
702
(bp) ,
233
(aa)
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Product
|
ATPase regulatory factor involved in DnaA inactivation
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Operon Name
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hda
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Note
|
putative DNA replication factor; GO_process: GO:0006261 - DNA-dependent DNA replication
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Function
|
putative factor; Not classified
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Gene Ontology
|
GO:0003677
;
DNA binding ( hda )
GO:0003688
;
DNA replication origin binding ( hda )
GO:0005515
;
protein binding ( hda )
GO:0005524
;
ATP binding ( hda )
GO:0006260
;
DNA replication ( hda )
GO:0006270
;
DNA replication initiation ( hda )
GO:0006275
;
regulation of DNA replication ( hda )
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PID
|
226510964
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EC number
(KEGG Pathway)
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SWISS-PROT
(
Show simple
)
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Entry name(Acc.no)
|
YFGE_ECOLI
(
P76570
;
P76979
)
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- Protein name
|
Hypothetical protein yfgE.
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- Synonyms
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- Gene name
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OrderedLocusNames=b2496, c3013, z3759, ECs3358, SF2540, S2689;
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- Comments
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SIMILARITY:Belongs to the dnaA family.
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Homology Analysis
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BLAST
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Bacteria
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GTOP
|
hda
(
homologous genes of other bacterias
)
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PDB
(database updated :
2007.02.20
)
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PSI-BLAST
|
Chain A, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus
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SWISS-PROT
(database updated :
2007.02.20
)
|
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BLAST
|
DnaA-homolog protein hda
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PSI-BLAST
|
Chromosomal replication initiator protein dnaA
|
|
nr
(database updated :
2007.02.20
)
|
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BLAST
|
DNA replication initiation factor [Escherichia coli O157:H7 EDL933]
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Pfam 28.0
(database updated :
2015-05
)
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Pfam
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PROSITE
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PROSITE
|
ASN_GLYCOSYLATION
CAMP_PHOSPHO_SITE
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
MYRISTYL
RGD
|
| Sequences |
Amino acid
FASTA format
|
0001 MNTPAQLSLP LYLPDDETFA SFWPGDNSSL LAALQNVLRQ EHSGYIYLWA REGAGRSHLL HAACAELSQR
0071 GDAVGYVPLD KRTWFVPEVL DGMEHLSLVC IDNIECIAGD ELWEMAIFDL YNRILESGKT RLLITGDRPP
0141 RQLNLGLPDL ASRLDWGQIY KLQPLSDEDK LQALQLRARL RGFELPEDVG RFLLKRLDRE MRTLFMTLDQ
0211 LDRASITAQR KLTIPFVKEI LKL
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Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 aaataatgta ccgaccgggc agtgttgctg
-070 cccggttcaa acatcatggg attctgtggt aaacttctcg cgattttgtg aaatcctggt tgaggtatct
0001 ctgaacacac cggcacagct ctctttgcca ctttatcttc ctgacgacga aacctttgca agtttctggc
0071 cgggggataa ctcctcttta ctggccgcgc tgcaaaacgt gctgcgtcag gaacatagcg gttacatcta
0141 tctctgggca cgcgaaggcg cggggcgcag ccatctgctg cacgcggctt gcgcggaatt gtcgcagcgt
0211 ggcgatgcgg tgggctatgt cccgctggat aaacgcacct ggtttgttcc ggaagtgctc gacggtatgg
0281 agcatttgtc gctggtctgt atcgacaaca ttgagtgtat tgcaggcgat gagttgtggg agatggcgat
0351 tttcgatctc tacaatcgaa ttctggaatc gggcaaaaca cggttgttga tcaccggcga tcgtccaccg
0421 cggcagttga atctgggatt accggatctc gcgtcgcgac tcgactgggg gcagatctac aaattgcagc
0491 cactttctga tgaagataag ttgcaggcgc tacagttacg cgcgcgtttg cgtggttttg aactgccgga
0561 agatgtgggg cgtttcttgc tgaagcggct cgacagagaa atgcgcacgc tatttatgac gttggatcag
0631 ttggatcgtg cgtcgattac cgcgcaacgt aagctgacca ttccgtttgt gaaagaaatt ctgaagttgt
0701 agataaggtg tttattgtcg gatgcggcgc gaacgcctta tccgaactac gcgaagttaa tccatagtat
0771 tcgtaggccg gataagacgt ggcaagcgtc gc
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