|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Deletion
|
OCR35-4
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
yaeF
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
yaeF
Search strains by all related name:
yaeF b0193 ECK0193 JW5016 yaeK
|
General information (Go to Linear View: )
|
|
Gene Name
|
yaeF
|
|
Alternative name
|
b0193,ECK0193,JW5016,yaeK
|
|
Location, Length
|
216,179 - 217,003
(
-
)
;
4.66
min
;
825
(bp) ,
274
(aa)
|
|
Product
|
putative lipoprotein
|
|
Operon Name
|
yaeF
|
|
Note
|
|
|
Function
|
|
|
Gene Ontology
|
GO:0005886
;
plasma membrane ( yaeF )
GO:0016020
;
membrane ( yaeF )
|
|
PID
|
87081699
|
EC number
(KEGG Pathway)
|
|
|
SWISS-PROT
(
Show simple
)
|
Entry name(Acc.no)
|
YAEF_ECOLI
(
P37056
)
|
|
- Protein name
|
Hypothetical lipoprotein yaeF precursor.
|
|
- Synonyms
|
|
|
- Gene name
|
Name=yaeF; OrderedLocusNames=b0193;
|
|
- Comments
|
SUBCELLULAR LOCATION:Attached to the membrane by a lipid anchor (Potential).
|
|
Entry name(Acc.no)
|
Q8CWC9
(
Q8CWC9
)
|
|
- Protein name
|
Hypothetical lipoprotein yaeF.
|
|
- Synonyms
|
|
|
- Gene name
|
Name=yaeF; OrderedLocusNames=c0234;
|
|
- Comments
|
SUBUNIT:Homotrimer (By similarity).
SUBCELLULAR LOCATION:Integral membrane protein. Outer membrane (By similarity).
SIMILARITY:Belongs to the Gram-negative porin family.
|
|
Entry name(Acc.no)
|
Q8X8W3
(
Q8X8W3
)
|
|
- Protein name
|
Hypothetical protein yaeF.
|
|
- Synonyms
|
|
|
- Gene name
|
Name=yaeF; OrderedLocusNames=z0205;
|
|
- Comments
|
SIMILARITY:Belongs to class-II aminoacyl-tRNA synthetase family.
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
yaeF
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
Chain A, Model Of Neurospora Crassa Proton Atpase
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
Hypothetical lipoprotein yaeF precursor
|
|
PSI-BLAST
|
Hypothetical lipoprotein yaeF precursor
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
lipoprotein [Escherichia coli B]
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
TYR_PHOSPHO_SITE
MYRISTYL
PROKAR_LIPOPROTEIN
|
| Sequences |
Amino acid
FASTA format
|
0001 MDKPKAYCRL FLPSFLLLSA CTVDISQPDP SATAVDAEAK TWAVKFQHQS SFTEQSIKEI TAPDLKPGDL
0071 LFSSSLGVTS FGIRVFSTSS VSHVAIFLGD NNVAEATGAG VQIVSLKKAM KHSDKLFVLR VPDLTPQQAT
0141 DITAFANKIK DSGYNYRGIV EFIPFMVTRQ MCSLNPFSED FRQQCVSGLA KAQLSSVGEG DKKSWFCSEF
0211 VTDAFAKAGH PLTLAQSGWI SPADLMHMRI GDVSAFKPET QLQYVGHLKP GIYIKAGRFV GLTR
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 agactggtga catcgtcgaa tatctggtga
-070 aacagattaa aggctgatgc cagaaagggt cctgaatttc agggcccttt ttttacatgg attgtataaa
0001 atggataaac caaaggcgta ctgccgcctg tttctcccca gctttctttt actttcggct tgtaccgttg
0071 atatcagcca gccagaccca tcagccacag cagtagatgc cgaggcaaaa acatgggctg tcaaattcca
0141 gcatcaaagc tctttcaccg aacaatcaat aaaagaaata acggcacctg atctcaaacc cggcgatttg
0211 ctgttctcct caagccttgg ggtaacctca tttggaatcc gcgtcttcag cacttcctct gtgagtcacg
0281 ttgcaatctt tctgggtgat aataacgttg cagaagcgac aggcgctggc gtccagatcg tttcccttaa
0351 aaaagcgatg aagcatagtg ataagctttt cgtcttacga gtcccggatc ttaccccgca acaagccaca
0421 gatatcaccg cgtttgccaa taaaatcaaa gatagcggtt ataactatcg cggcattgtc gaatttattc
0491 cctttatggt gactcgccag atgtgctcac tgaatccgtt ctccgaggat tttcgccaac agtgcgtcag
0561 cggcctggcg aaagcgcagt taagcagtgt gggcgaagga gacaaaaagt cgtggttttg ttcggaattt
0631 gtcacggatg cctttgccaa agccgggcat ccacttacac tggcgcaatc gggctggatt agccctgccg
0701 atctgatgca tatgcgtatt ggtgatgtct ctgcgtttaa gccagaaacg cagttacagt atgttgggca
0771 cctgaagcct gggatttata tcaaggcggg tcgctttgtt ggtttgaccc ggtgataaag taaatgcctt
0841 atccgcctta aggtatgagg ggggttgtag gcatgataag acgcgccagc gtcgcatcag gcgttgagca
0911 ccattgccgg atgcg
|
