MG1655
W3110
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Gene Report : ddpF
PEC Original Annotations
Essentiality
     Class non-essential
     References (PMID)  
     Deletion 20 (LD)  ,  DE(PLK1608)  ,  OCR70,L90-5 (LD 20-1_P/O) (D)  ,  OCR70,L90-6 (LD 20-1_P/O & 20-2TC) (D)  
Related gene (W3110 PEC)
     Gene Search Search MG1655 PEC by gene name:  ddpF
Related strains
     Strains Search Search strains by gene name:  ddpF   Search strains by all related name:  ddpF b1483 ECK1477 f308 f308d JW1478 yddO

General information  (Go to Linear View:)
 Gene Name ddpF  
 Alternative name b1483,ECK1477,f308,f308d,JW1478,yddO  
 Location, Length 1,555,136 - 1,556,062 (  -  ) ;   33.52 min ; 927 (bp) ,   308 (aa) Go to Linear View
 Product D,D-dipeptide permease system, ATP-binding component  
 Operon Name ddpXABCDF  
 Note ATP-binding component of ABC superfamily; GO_component: GO:0005737 - cytoplasm  
 Function putative transport; Not classified  
 Gene Ontology GO:0000166 ; nucleotide binding ( ddpF )
GO:0005524 ; ATP binding ( ddpF )
GO:0005886 ; plasma membrane ( ddpF )
GO:0006810 ; transport ( ddpF )
GO:0006857 ; oligopeptide transport ( ddpF )
GO:0015031 ; protein transport ( ddpF )
GO:0015197 ; peptide transporter activity ( ddpF )
GO:0015198 ; oligopeptide transporter activity ( ddpF )
GO:0015833 ; peptide transport ( ddpF )
GO:0016020 ; membrane ( ddpF )
GO:0016887 ; ATPase activity ( ddpF )
GO:0017111 ; nucleoside-triphosphatase activity ( ddpF )
 PID 1787758  
 EC number
  (KEGG Pathway)   		 
SWISS-PROT  ( Show simple )
  botton Entry name(Acc.no) YDDO_ECOLI ( P77622 ; P76870 )
    -  Protein name Hypothetical ABC transporter ATP-binding protein yddO.  
    -  Synonyms  
    -  Gene name Name=yddO; OrderedLocusNames=b1483;  
    -  Comments
  • FUNCTION:Probably part of a binding-protein-dependent transport system yddOPQRS. Probably responsible for energy coupling to the transport system.
  • SIMILARITY:Belongs to the ABC transporter family.  

    •  Linear View (Whole Mode)
    View Location
       1545.0  –  1570.0 (KBP)

    Homology Analysis
    BLAST
        Bacteria
             GTOP ddpF (  homologous genes of other bacterias  )  
        PDB     (database updated : 2007.02.20 )
             PSI-BLAST Chain A, Crystal Structure Of The Atp-Binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp  
        SWISS-PROT     (database updated : 2007.02.20 )
             BLAST Hypothetical ABC transporter ATP-binding protein yddO  
             PSI-BLAST Methionine import ATP-binding protein metN
        nr     (database updated : 2007.02.20 )
             BLAST D-ala-D-ala transporter subunit [Escherichia coli K12]  
    Pfam 28.0   (database updated : 2015-05 )
        Pfam
    PROSITE
        PROSITE ASN_GLYCOSYLATION    GLYCOSAMINOGLYCAN    CAMP_PHOSPHO_SITE    PKC_PHOSPHO_SITE    CK2_PHOSPHO_SITE    MYRISTYL    ATP_GTP_A    ABC_TRANSPORTER     

    Other Cross-Reference
        COG COG1124EP 
        EcoCyc ddpF 

    Sequences
    Amino acid
    FASTA format 
    0001 MSDTLLTLRD VHINFPARKN WLGKTTEHVH AINGIDLQIR RGETLGIVGE SGCGKSTLAQ LLMGMLQPSH 
0071 GQYIRSGSQR IMQMVFQDPL SSLNPRLPVW RIITEPLWIA KRSSEQQRRA LAEELAVQVG IRPEYLDRLP 
0141 HAFSGGQRQR IAIARALSSQ PDVIVLDEPT SALDISVQAQ ILNLLVTLQE NHGLTYVLIS HNVSVIRHMS 
0211 DRVAVMYLGQ IVELGDAQQV LTAPAHPYTR LLLDSLPAID KPLEEEWALR KTDLPGNRTL PQGCFFYERC 
0281 PLATHGCEVR QSLAIREDGR ELRCWRAL
    Nucleotide
    FASTA format

    View sequence out neighbor 100bp 
    -100                                             tatgcggcag gtgcacagtg tgaaaacgtc 
-070 ccggcgctga cagcgtgtgg tgacaacaac cagcgctgtg cctgttggta tccgcagcag gaggttataa 
0001 gtgtctgaca cgttattaac gttacgcgac gtccatatca atttcccggc ccgtaaaaac tggcttggta 
0071 aaactacgga acatgttcat gccattaatg gtattgattt acagatccgc cgtggtgaaa ccttagggat 
0141 cgtcggcgag tcaggctgcg gcaaaagcac cctcgcacag cttttaatgg gtatgctgca accgagccac 
0211 gggcagtaca tccgttctgg ctcacaacgc attatgcaga tggtgtttca ggacccgctc tcttcgctta 
0281 atccgcgctt accggtgtgg cgcatcatca cagaaccgct ctggatagct aagcgtagta gtgaacaaca 
0351 gcggcgagcg ttggcagagg agttggctgt gcaggtgggt attcgtccgg agtatctcga ccgcctgcct 
0421 catgcgttct ccggcgggca gcggcaacgt atcgccattg ccagagcact ctcttcgcag cctgacgtga 
0491 ttgtgcttga tgagccaacc tctgcgctgg atatctccgt tcaggcgcag atcctcaatt tactggtaac 
0561 gctacaggaa aatcacgggc tgacctatgt gctgatttca cacaatgtct cggtgatacg tcatatgagc 
0631 gatcgggtgg cggtgatgta tctcgggcag attgtagaac tgggcgacgc gcagcaggtg ctgacggcac 
0701 ctgcacatcc atacacccga ttattgctgg attccctccc cgccattgat aaaccgctgg aggaagaatg 
0771 ggcattacgt aaaacggatc tgccgggaaa ccgcacgttg ccgcaaggct gttttttcta cgaacgttgc 
0841 ccgctggcaa cccacggatg tgaagtccgg caatcattag caataaggga ggacggacgt gagctccggt 
0911 gctggcgggc gctgtagaga tgctaacaac gcatcaggca ttcacgcgcc tgacgcgtca tccggcaatg 
0981 ctttacgatt tcaactggta atccagcgta atttccgctt tcagtac