MG1655
W3110
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Gene Report : oppF
PEC Original Annotations
Essentiality
     Class non-essential
     References (PMID)
Escherichia coli and Salmonella, Cellular and Molecular Biology Second Edition. ASM Press. 1996
Neidhart, F.C.
     Deletion OCR68 (D)  
Related gene (W3110 PEC)
     Gene Search Search MG1655 PEC by gene name:  oppF
Related strains
     Strains Search Search strains by gene name:  oppF   Search strains by all related name:  oppF b1247 ECK1241 JW1239

General information  (Go to Linear View:)
 Gene Name oppF  
 Alternative name b1247,ECK1241,JW1239  
 Location, Length 1,303,788 - 1,304,792 (  +  ) ;   28.10 min ; 1005 (bp) ,   334 (aa) Go to Linear View
 Product oligopeptide transporter subunit  
 Operon Name oppABCDF  
 Note homolog of Salmonella ATP-binding protein of oligopeptide ABC transport system; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0005737 - cytoplasm; GO_process: GO:0000270 - peptidoglycan metabolic process  
 Function putative transport; Not classified  
 Gene Ontology GO:0000166 ; nucleotide binding ( oppF )
GO:0005524 ; ATP binding ( oppF )
GO:0005886 ; plasma membrane ( oppF )
GO:0006810 ; transport ( oppF )
GO:0006857 ; oligopeptide transport ( oppF )
GO:0015031 ; protein transport ( oppF )
GO:0015197 ; peptide transporter activity ( oppF )
GO:0015198 ; oligopeptide transporter activity ( oppF )
GO:0015833 ; peptide transport ( oppF )
GO:0016020 ; membrane ( oppF )
GO:0016887 ; ATPase activity ( oppF )
GO:0017111 ; nucleoside-triphosphatase activity ( oppF )
 PID 1787500  
 EC number
  (KEGG Pathway)   		 
SWISS-PROT  ( Show simple )
  botton Entry name(Acc.no) OPPF_ECOLI ( P77737 ; P76920 )
    -  Protein name Oligopeptide transport ATP-binding protein oppF.  
    -  Synonyms  
    -  Gene name Name=oppF; OrderedLocusNames=b1247;  
    -  Comments
  • FUNCTION:Part of the binding-protein-dependent transport system for oligopeptides. Probably responsible for energy coupling to the transport system.
  • SUBCELLULAR LOCATION:Inner membrane-associated.
  • SIMILARITY:Belongs to the ABC transporter family.  
    •   botton Entry name(Acc.no) Q8FHW8 ( Q8FHW8 )
        -  Protein name Oligopeptide transport ATP-binding protein oppF.  
        -  Synonyms  
        -  Gene name Name=oppF; OrderedLocusNames=c1711;  
        -  Comments
  • SIMILARITY:Belongs to the ABC transporter family.  
    •   botton Entry name(Acc.no) Q8X558 ( Q8X558 )
        -  Protein name Homolog of Salmonella ATP-binding protein of oligopeptide ABC transport system.  
        -  Synonyms  
        -  Gene name Name=oppF; OrderedLocusNames=z2023;  
        -  Comments
  • SIMILARITY:Belongs to the ABC transporter family.  

    •  Linear View (Whole Mode)
    View Location
       1295.0  –  1320.0 (KBP)

    Homology Analysis
    BLAST
        Bacteria
             GTOP oppF (  homologous genes of other bacterias  )  
        PDB     (database updated : 2007.02.20 )
             PSI-BLAST Chain A, Crystal Structure Of The Atp-Bound E. Coli Malk  
        SWISS-PROT     (database updated : 2007.02.20 )
             BLAST Oligopeptide transport ATP-binding protein oppF  
             PSI-BLAST Methionine import ATP-binding protein metN 1
        nr     (database updated : 2007.02.20 )
             BLAST oligopeptide transporter subunit [Escherichia coli K12]  
    Pfam 28.0   (database updated : 2015-05 )
        Pfam
    PROSITE
        PROSITE ASN_GLYCOSYLATION    GLYCOSAMINOGLYCAN    PKC_PHOSPHO_SITE    CK2_PHOSPHO_SITE    MYRISTYL    AMIDATION    ATP_GTP_A    ABC_TRANSPORTER     

    Other Cross-Reference
        COG COG4608E 
        EcoCyc oppF 

    MMBR References
    Eur J Biochem. 1989;180:133-141
    Identification and localization of the membrane-associated, ATP-binding subunit of the oligopeptide permease of Salmonella typhimurium.
    Gallagher, M. P., S. R. Pearce, and C. F. Higgins.

    Sequences
    Amino acid
    FASTA format 
    0001 MNAVTEGRKV LLEIADLKVH FEIKDGKQWF WQPPKTLKAV DGVTLRLYEG ETLGVVGESG CGKSTFARAI 
0071 IGLVKATDGH VAWLGKELLG MKPDEWRAVR SDIQMIFQDP LASLNPRMTI GEIIAEPLRT YHPKMSRQEV 
0141 RERVKAMMLK VGLLPNLINR YPHEFSGGQC QRIGIARALI LEPKLIICDE PVSALDVSIQ AQVVNLLQQL 
0211 QREMGLSLIF IAHDLAVVKH ISDRVLVMYL GHAVELGTYD EVYHNPLHPY TRALMSAVPI PDPDLEKNKT 
0281 IQLLEGELPS PINPPSGCVF RTRCPIAGPE CAKTRPVLEG SFRHSVSCLK VDPL
    Nucleotide
    FASTA format

    View sequence out neighbor 100bp 
    -100                                             GTTGTCCGCA TGCGATGGAA ATTTGTAGTA 
-070 GCGCACCGCC GCTGGAAGAG TTTACGCCTG GCCGTCTGCG TGCTTGCTTT AAACCGGTGG AGGAACTGTT 
0001 atgaatgctg taactgaagg aagaaaagtc ctccttgaaa tcgccgatct taaagtgcac tttgaaatca 
0071 aagatggcaa acagtggttc tggcaaccgc cgaaaacgct caaagccgtc gatggtgtca ctcttcgcct 
0141 gtatgaaggg gaaacattag gtgtggtagg ggaatcggga tgcggtaagt ccacctttgc tcgcgccatc 
0211 atcggtttgg tcaaggcgac cgacggtcat gttgcctggt taggtaaaga gttgctgggc atgaaacccg 
0281 atgaatggcg tgccgttcgc agtgatattc agatgatttt ccaggatccg ttggcatcgc taaacccgcg 
0351 tatgaccatc ggcgagatca tcgctgaacc actgcgtact tatcatccga aaatgtcacg ccaggaagtt 
0421 cgcgagcgcg tgaaggcgat gatgctgaaa gtcgggttat tgcctaacct gattaaccgc tatccgcatg 
0491 agttctctgg tgggcagtgc cagcgtatcg ggattgcgcg tgctcttatt cttgaaccga agctgattat 
0561 ctgtgatgag ccggtgtcgg cgctggacgt gtcaattcag gcacaggtgg tcaacctgct ccagcaattg 
0631 caacgtgaga tgggattgtc attaattttt atcgctcatg acctggccgt ggtaaaacac atttccgatc 
0701 gtgtgttggt gatgtatctc ggccatgcgg tagaactggg gacctatgat gaggtctacc acaatccact 
0771 acatccttac accagggcat tgatgtcggc agtccccata cctgatccgg atctggagaa gaacaaaacc 
0841 atccagttac tggaagggga attaccgtcg ccgatcaacc cgccttccgg ttgtgttttc cgtacccgtt 
0911 gcccgattgc cggtccagag tgcgccaaaa cacgtcctgt tctggagggg agtttcagac actccgtttc 
0981 ttgcctgaaa gtcgatccgc tttaaAAACA ATAAGGGCTG ACAGTTGTCA GCCCTTTTTC ACGCTAAAAG 
1051 CGATTATTTA TTCCCGCCAG ATGATATGGC AAAGTTTGTG ATCTTTTTCG CGGCA