MG1655
W3110
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Gene Report : oppD
PEC Original Annotations
Essentiality
     Class non-essential
     References (PMID)
Escherichia coli and Salmonella, Cellular and Molecular Biology Second Edition. ASM Press. 1996
Neidhart, F.C.
     Deletion OCR68 (D)  
Related gene (W3110 PEC)
     Gene Search Search MG1655 PEC by gene name:  oppD
Related strains
     Strains Search Search strains by gene name:  oppD   Search strains by all related name:  oppD b1246 ECK1240 JW1238

General information  (Go to Linear View:)
 Gene Name oppD  
 Alternative name b1246,ECK1240,JW1238  
 Location, Length 1,302,778 - 1,303,791 (  +  ) ;   28.08 min ; 1014 (bp) ,   337 (aa) Go to Linear View
 Product oligopeptide transporter subunit  
 Operon Name oppABCDF  
 Note homolog of Salmonella ATP-binding protein of oligopeptide ABC transport system; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0005737 - cytoplasm; GO_process: GO:0000270 - peptidoglycan metabolic process  
 Function putative transport; Not classified  
 Gene Ontology GO:0000166 ; nucleotide binding ( oppD )
GO:0005524 ; ATP binding ( oppD )
GO:0005886 ; plasma membrane ( oppD )
GO:0006810 ; transport ( oppD )
GO:0006857 ; oligopeptide transport ( oppD )
GO:0015031 ; protein transport ( oppD )
GO:0015197 ; peptide transporter activity ( oppD )
GO:0015198 ; oligopeptide transporter activity ( oppD )
GO:0015833 ; peptide transport ( oppD )
GO:0016020 ; membrane ( oppD )
GO:0016887 ; ATPase activity ( oppD )
GO:0017111 ; nucleoside-triphosphatase activity ( oppD )
 PID 48994883  
 EC number
  (KEGG Pathway)   		 
SWISS-PROT  ( Show simple )
  botton Entry name(Acc.no) OPPD_ECOLI ( P76027 ; P77382 )
    -  Protein name Oligopeptide transport ATP-binding protein oppD.  
    -  Synonyms  
    -  Gene name Name=oppD; OrderedLocusNames=b1246;  
    -  Comments
  • FUNCTION:Part of the binding-protein-dependent transport system for oligopeptides. Probably responsible for energy coupling to the transport system.
  • SUBCELLULAR LOCATION:Inner membrane-associated.
  • SIMILARITY:Belongs to the ABC transporter family.  
    •   botton Entry name(Acc.no) Q8FHW9 ( Q8FHW9 )
        -  Protein name Oligopeptide transport ATP-binding protein oppD.  
        -  Synonyms  
        -  Gene name Name=oppD; OrderedLocusNames=c1710;  
        -  Comments
  • SIMILARITY:Belongs to the ABC transporter family.  
    •   botton Entry name(Acc.no) Q8X559 ( Q8X559 )
        -  Protein name Homolog of Salmonella ATP-binding protein of oligopeptide ABC transport system.  
        -  Synonyms  
        -  Gene name Name=oppD; OrderedLocusNames=z2022;  
        -  Comments
  • SIMILARITY:Belongs to the ABC transporter family.  

    •  Linear View (Whole Mode)
    View Location
       1290.0  –  1315.0 (KBP)

    Homology Analysis
    BLAST
        Bacteria
             GTOP oppD (  homologous genes of other bacterias  )  
        PDB     (database updated : 2007.02.20 )
             PSI-BLAST Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius  
        SWISS-PROT     (database updated : 2007.02.20 )
             BLAST Oligopeptide transport ATP-binding protein oppD  
             PSI-BLAST Oligopeptide transport ATP-binding protein oppD
        nr     (database updated : 2007.02.20 )
             BLAST oligopeptide transporter ATP-binding component [Escherichia coli K12]  
    Pfam 28.0   (database updated : 2015-05 )
        Pfam
    PROSITE
        PROSITE ASN_GLYCOSYLATION    GLYCOSAMINOGLYCAN    PKC_PHOSPHO_SITE    CK2_PHOSPHO_SITE    MYRISTYL    ATP_GTP_A    ABC_TRANSPORTER     

    Other Cross-Reference
        COG COG0444EP 
        EcoCyc oppD 

    MMBR References
    J Bacteriol. 1985;161(2):484-92.
    Genetic analysis of Escherichia coli oligopeptide transport mutants.
    Andrews JC, Short SA. ( 2981814 )
    J Bacteriol. 1983;153(3):1548-51.
    Genetic organization of the oligopeptide permease (opp) locus of Salmonella typhimurium and Escherichia coli.
    Hogarth BG, Higgins CF. ( 6338001 )

    Sequences
    Amino acid
    FASTA format 
    0001 MSVIETATVP LAQQQADALL NVKDLRVTFS TPDGDVTAVN DLNFSLRAGE TLGIVGESGS GKSQTAFALM 
0071 GLLAANGRIG GSATFNGREI LNLPEHELNK LRAEQISMIF QDPMTSLNPY MRVGEQLMEV LMLHKNMSKA 
0141 EAFEESVRML DAVKMPEARK RMKMYPHEFS GGMRQRVMIA MALLCRPKLL IADEPTTALD VTVQAQIMTL 
0211 LNELKREFNT AIIMITHDLV VVAGICDKVL VMYAGRTMEY GNARDVFYQP VHPYSIGLLN AVPRLDAEGE 
0281 TMLTIPGNPP NLLRLPKGCP FQPRCPHAME ICSSAPPLEE FTPGRLRACF KPVEELL
    Nucleotide
    FASTA format

    View sequence out neighbor 100bp 
    -100                                             TCCCAGCGGG ATTCCTCGTG GTGACGCTGT 
-070 TTTGTTTCAA CTTTATCGGC GATGGCTTGC GTGATGCCCT CGACCCGAAA GATCGTTAAG GAGTGCAGCC 
0001 atgagcgtaa ttgaaactgc aactgtgccg ctcgcacaac aacaggctga cgcactgctg aacgtgaaag 
0071 atttgcgtgt cacctttagt accccggacg gcgacgtcac ggcggtcaat gatttgaatt tttccctacg 
0141 tgccggagaa acgctgggta ttgtaggtga gtctggttcg ggtaaatcgc aaactgcatt tgcgttgatg 
0211 ggcctgttgg ctgccaacgg acgtattggc ggatcggcaa ccttcaatgg gcgtgaaatc ctcaatttgc 
0281 cagagcatga actcaataaa ctgcgcgctg aacaaatctc aatgattttt caggacccaa tgacttcgtt 
0351 gaatccctat atgcgcgtcg gtgagcagtt gatggaagtg ctgatgctgc ataagaacat gagcaaagct 
0421 gaggcgtttg aagagtcggt gcggatgctc gatgcggtaa aaatgccgga agcgcgtaaa cgcatgaaaa 
0491 tgtacccgca cgaattttct ggcggcatgc gtcagcgagt catgattgcg atggccttgt tatgtcgacc 
0561 taagctgctg attgcggatg aaccaacaac tgcgctggac gtcaccgtac aggcgcagat catgacgcta 
0631 ttaaatgaac tgaagcggga atttaatacc gccatcatta tgatcaccca cgatcttgtc gtggtggcgg 
0701 ggatctgcga caaagtgctg gtaatgtacg ccgggcgcac gatggaatat ggcaacgcgc gcgatgtctt 
0771 ttatcaaccc gttcatcctt attctatcgg tttgctcaac gcggtgccgc gtctcgatgc ggaaggtgaa 
0841 acaatgttga ccatcccggg taatccgcca aacctgctgc gattaccgaa aggttgcccg ttccagccac 
0911 gttgtccgca tgcgatggaa atttgtagta gcgcaccgcc gctggaagag tttacgcctg gccgtctgcg 
0981 tgcttgcttt aaaccggtgg aggaactgtt atgaATGCTG TAACTGAAGG AAGAAAAGTC CTCCTTGAAA 
1051 TCGCCGATCT TAAAGTGCAC TTTGAAATCA AAGATGGCAA ACAGTGGTTC TGGCAACCGC CGAA