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PEC Original Annotations
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Essentiality
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Class
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non-essential
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|
References (PMID)
|
Escherichia coli and Salmonella, Cellular and Molecular Biology Second Edition. ASM Press. 1996
Neidhart, F.C.
|
|
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Deletion
|
OCR68
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
oppB
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Related strains
|
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Strains Search
|
Search strains by gene name:
oppB
Search strains by all related name:
oppB b1244 ECK1238 JW1236 stkB
|
General information (Go to Linear View: )
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Gene Name
|
oppB
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|
Alternative name
|
b1244,ECK1238,JW1236,stkB
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|
Location, Length
|
1,300,923 - 1,301,843
(
+
)
;
28.04
min
;
921
(bp) ,
306
(aa)
|
|
Product
|
oligopeptide transporter subunit
|
|
Operon Name
|
oppABCDF
|
|
Note
|
oligopeptide transport permease protein; membrane component of ABC superfamily; GO_component: GO:0009274 - peptidoglycan-based cell wall; GO_component: GO:0019866 - organelle inner membrane; GO_process: GO:0000270 - peptidoglycan metabolic process
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Function
|
transport; Protein, peptide secretion
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|
Gene Ontology
|
GO:0005215
;
transporter activity ( oppB )
GO:0005886
;
plasma membrane ( oppB )
GO:0006810
;
transport ( oppB )
GO:0006857
;
oligopeptide transport ( oppB )
GO:0015031
;
protein transport ( oppB )
GO:0015198
;
oligopeptide transporter activity ( oppB )
GO:0016020
;
membrane ( oppB )
GO:0016021
;
integral to membrane ( oppB )
|
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PID
|
1787497
|
EC number
(KEGG Pathway)
|
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SWISS-PROT
(
Show simple
)
|
Entry name(Acc.no)
|
OPPB_ECOLI
(
P31132
;
P76026; P77550
)
|
|
- Protein name
|
Oligopeptide transport system permease protein oppB.
|
|
- Synonyms
|
|
|
- Gene name
|
OrderedLocusNames=b1244, c1708, z2020, ECs1744, SF1245, S1331;
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- Comments
|
FUNCTION:Part of the binding-protein-dependent transport system for oligopeptides; probably responsible for the translocation of the substrate across the membrane.
SUBCELLULAR LOCATION:Integral membrane protein. Inner membrane.
SIMILARITY:Belongs to the binding-protein-dependent transport system permease family. OppBC subfamily.
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Homology Analysis
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BLAST
|
|
Bacteria
|
|
GTOP
|
oppB
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
Oligopeptide transport system permease protein oppB
|
|
PSI-BLAST
|
Oligopeptide transport system permease protein oppB
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
oligopeptide permease ABC transporter membrane component [Escherichia coli O157:H7 str. Sakai]
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Pfam 28.0
(database updated :
2015-05
)
|
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Pfam
|
|
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PROSITE
|
|
PROSITE
|
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
MYRISTYL
BPD_TRANSP_INN_MEMBR
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MMBR References
|
J Bacteriol. 1985;161(2):484-92.
Genetic analysis of Escherichia coli oligopeptide transport mutants.
Andrews JC, Short SA.
(
2981814
)
|
J Bacteriol. 1983;153(3):1548-51.
Genetic organization of the oligopeptide permease (opp) locus of Salmonella typhimurium and Escherichia coli.
Hogarth BG, Higgins CF.
(
6338001
)
|
J Bacteriol. 1980;143(2):747-52.
Locations of the opp and supX genes of Salmonella typhimurium and Escherichia coli.
Lenny AB, Margolin P.
(
7009564
)
|
| Sequences |
Amino acid
FASTA format
|
0001 MLKFILRRCL EAIPTLFILI TISFFMMRLA PGSPFTGERT LPPEVMANIE AKYHLNDPIM TQYFSYLKQL
0071 AHGDFGPSFK YKDYSVNDLV ASSFPVSAKL GAAAFFLAVI LGVSAGVIAA LKQNTKWDYT VMGLAMTGVV
0141 IPSFVVAPLL VMIFAIILHW LPGGGWNGGA LKFMILPMVA LSLAYIASIA RITRGSMIEV LHSNFIRTAR
0211 AKGLPMRRII LRHALKPALL PVLSYMGPAF VGIITGSMVI ETIYGLPGIG QLFVNGALNR DYSLVLSLTI
0281 LVGALTILFN AIVDVLYAVI DPKIRY
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 ATTGTGAAGC ACTAATGGCA ATACGTGGGG
-070 CAGGAGTGTC CTGCTCCACG GTGTCTGATT TTTATCGCAT TACAGAAGGC ACAGGCCAGA AGGTAGGGCA
0001 atgttaaaat ttattctacg tcgctgtctg gaagcgattc cgacgctatt tattcttatt actatttcgt
0071 tctttatgat gcgcctcgcg ccgggaagcc cttttaccgg cgaacgtact ttaccgccag aagtgatggc
0141 caatatcgaa gcgaaatatc atcttaatga tccgatcatg acacagtatt tcagctacct gaaacaactg
0211 gcgcacggtg atttcggtcc atcgtttaaa tataaagatt attcggtcaa tgacttggtt gcatccagtt
0281 ttcccgtttc tgccaaactg ggagccgcag catttttcct tgcggtaata ctgggtgtta gtgctggcgt
0351 tattgccgca ttaaaacaaa acaccaaatg ggactatacc gtgatggggc tggcaatgac cggggttgtt
0421 atccccagtt ttgtggttgc accattatta gtcatgatat ttgcgatcat tttgcattgg ctgccgggcg
0491 gtggctggaa tggtggggcg cttaaattca tgatattgcc gatggtggcg ttgtcactcg cttatatcgc
0561 cagtattgcg cgtattaccc gtggctctat gattgaagta ttacactcca attttattcg tactgcccgg
0631 gcgaaagggt tacctatgcg gcggatcatt ttacgtcacg cattaaaacc tgctctgtta cccgtgctct
0701 cttatatggg ccccgcattt gtcggcatta ttaccggttc tatggttatc gaaaccattt atggtttgcc
0771 ggggattgga caactgttcg ttaatggcgc attgaaccgt gactattcct tagtgttaag cctgaccatc
0841 ctggttggtg ctttaaccat tttgtttaat gccattgtcg atgtgctata tgcggttatc gacccgaaaa
0911 tccgttactg aTACTGGAGC TCGCGATGAT GTTAAGTAAG AAAAACAGCG AGACGCTGGA AAATTTCAGT
0981 GAAAAGCTGG AGGTCGAAGG GCGCAGCTTG TGGCAGGACG C
|
