|
PEC Original Annotations
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|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Deletion
|
DE(araA-leu)7697
,
OCR30
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
sgrR
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
sgrR
Search strains by all related name:
sgrR b0069 ECK0070 JW0068 yabN
|
General information (Go to Linear View: )
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|
Gene Name
|
sgrR
|
|
Alternative name
|
b0069,ECK0070,JW0068,yabN
|
|
Location, Length
|
75,644 - 77,299
(
-
)
;
1.63
min
;
1656
(bp) ,
551
(aa)
|
|
Product
|
transcriptional DNA-binding transcriptional activator of sgrS sRNA
|
|
Operon Name
|
sgrR-sroA-tbpA-thiPQ
|
|
Note
|
putative transport protein; GO_component: GO:0042597 - periplasmic space
|
|
Function
|
transport; Not classified
|
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Gene Ontology
|
GO:0003677
;
DNA binding ( sgrR )
GO:0005215
;
transporter activity ( sgrR )
GO:0006350
;
transcription ( sgrR )
GO:0006355
;
regulation of transcription, DNA-dependent ( sgrR )
GO:0006810
;
transport ( sgrR )
GO:0016563
;
transcription activator activity ( sgrR )
GO:0016564
;
transcription repressor activity ( sgrR )
GO:0045449
;
regulation of transcription ( sgrR )
|
|
PID
|
1786256
|
EC number
(KEGG Pathway)
|
|
|
SWISS-PROT
(
Show details
[
2
more]
)
|
Entry name(Acc.no)
|
YABN_ECOLI
(
P33595
;
P75638
)
|
|
- Protein name
|
Hypothetical protein yabN.
|
|
- Synonyms
|
|
|
- Gene name
|
Name=yabN; OrderedLocusNames=b0069;
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Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
sgrR
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
Chain A, Dipeptide Binding Protein Complex With Glycyl-L-Leucine
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
Hypothetical protein yabN
|
|
PSI-BLAST
|
Hypothetical protein yabN
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
DNA-binding transcriptional regulator [Escherichia coli K12]
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
ASN_GLYCOSYLATION
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
TYR_PHOSPHO_SITE
MYRISTYL
AMIDATION
|
| Sequences |
Amino acid
FASTA format
|
0001 MPSARLQQQF IRLWQCCEGK SQDTTLNELA ALLSCSRRHM RTLLNTMQDR GWLTWEAEVG RGKRSRLTFL
0071 YTGLALQQQR AEDLLEQDRI DQLVQLVGDK ATVRQMLVSH LGRSFRQGRH ILRVLYYRPL RNLLPGSALR
0141 RSETHIARQI FSSLTRINEE NGELEADIAH HWQQISPLHW RFFLRPGVHF HHGRELEMDD VIASLKRINT
0211 LPLYSHIADI VSPTPWTLDI HLTQPDRWLP LLLGQVPAMI LPREWETLSN FASHPIGTGP YAVIRNSTNQ
0281 LKIQAFDDFF GYRALIDEVN VWVLPEIADE PAGGLMLKGP QGEEKEIESR LEEGCYYLLF DSRTHRGANQ
0351 QVRDWVSYVL SPTNLVYFAE EQYQQLWFPA YGLLPRWHHA RTIKSEKPAG LESLTLTFYQ DHSEHRVIAG
0421 IMQQILASHQ VTLKIKEIDY DQWHTGEIES DIWLNSANFT LPLDFSVFAH LCEVPLLQHC IPIDWQADAA
0491 RWRNGEMNLA NWCQQLVASK AMVPLLHHWL IIQGQRSMRG LRMNTLGWFD FKSAWFAPPD P
|
Nucleotide
FASTA format
View sequence in neighbor 100bp
|
0001 atgccatctg ctcgtctgca acaacagttc atccgcctgt ggcaatgctg cgagggtaaa tcgcaggaca
0071 caacgctcaa cgaactggca gcgttattga gctgctcgcg tcgtcatatg cgcaccctgc tcaacaccat
0141 gcaggatcgc ggctggctga cgtgggaagc ggaagtcggg cgcggtaaac gctcgcgtct gacattcctc
0211 tataccgggc tggcgcttca gcaacagcgg gcggaagacc tgctggagca ggatcgtatc gatcaactgg
0281 tgcagttggt tggcgacaaa gcgactgtgc ggcaaatgct ggtttctcat ctgggccgca gcttccgcca
0351 ggggcggcac atcctgcgcg tgctctacta tcgtccgttg cgtaatctgc tacctggcag cgcattgcgc
0421 cgttccgaaa cccatatcgc ccggcaaatc ttcagttcgc taacgcgcat aaatgaggaa aatggggaac
0491 tggaagcaga catcgcccac cactggcagc aaatttcacc gcttcactgg cgtttctttt tgcgtccagg
0561 agtccatttt caccatggtc gtgaactgga aatggacgat gtgatcgcct ctttaaaacg aatcaatacg
0631 ctgccgctct attcgcatat tgctgacatt gtgtcgccga cgccctggac gctggatatc catctcacgc
0701 aaccggaccg ctggttaccg ttactgctgg ggcaagttcc ggcgatgatc ctgccgcgcg aatgggaaac
0771 cctcagtaac tttgccagcc atcccatcgg caccggtccg tatgcggtga ttcgcaacag caccaatcaa
0841 ctgaaaattc aggcattcga tgacttcttc ggttaccggg cattaatcga cgaagttaac gtctgggttc
0911 tgccggaaat tgccgacgag ccagccggag ggctgatgct aaaaggtcca cagggcgagg aaaaagagat
0981 tgaaagccgc ctggaggaag gttgctacta tttactgttc gacagccgca cccatcgcgg ggcgaatcag
1051 caagtcaggg actgggtaag ctatgtgctt tctccaacta atctggtcta tttcgctgag gaacagtacc
1121 agcaactgtg gttcccggct tatggactgc tcccccgttg gcaccatgcc cgcaccataa agagcgaaaa
1191 accggctggc ctggaaagcc tcaccctaac cttttatcag gatcacagtg agcatcgggt gattgccggg
1261 atcatgcagc agattctggc aagtcaccag gtcacgctga aaatcaaaga gatcgactac gatcagtggc
1331 atacaggaga gatcgaaagt gatatctggc taaacagcgc caactttacc ctgccgctgg acttctctgt
1401 tttcgcacat ttatgcgaag tgccactgct acaacattgc attcccattg actggcaagc cgacgctgct
1471 cgctggcgca atggcgagat gaatctggcg aactggtgcc agcaactggt cgccagcaaa gcgatggtgc
1541 cattattgca ccactggctg atcattcagg ggcaacgcag tatgcgcggc ctgcgcatga ataccctcgg
1611 ctggttcgat tttaaatcag cgtggtttgc gccaccggat ccatga
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