|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Deletion
|
OCR62-1
(D)
,
OCR62-6
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
hinT
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
hinT
Search strains by all related name:
hinT b1103 ECK1089 JW1089 o119 ycfF
|
General information (Go to Linear View: )
|
|
Gene Name
|
hinT
|
|
Alternative name
|
b1103,ECK1089,JW1089,o119,ycfF
|
|
Location, Length
|
1,161,108 - 1,161,467
(
+
)
;
25.03
min
;
360
(bp) ,
119
(aa)
|
|
Product
|
purine nucleoside phosphoramidase, dadA activator protein
|
|
Operon Name
|
hinT-ycfL-lpoB-thiK-nagZ-ycfP
|
|
Note
|
GO_process: GO:0006412 - translation
|
|
Function
|
|
|
Gene Ontology
|
GO:0003824
;
catalytic activity ( hinT )
|
|
PID
|
1787346
|
EC number
(KEGG Pathway)
|
|
|
SWISS-PROT
(
Show simple
)
|
Entry name(Acc.no)
|
YCFF_ECOLI
(
P36950
;
P75945
)
|
|
- Protein name
|
HIT-like protein ycfF.
|
|
- Synonyms
|
|
|
- Gene name
|
Name=ycfF; OrderedLocusNames=b1103, z1742, ECs1481, SF1107, S1187;
|
|
- Comments
|
SIMILARITY:Belongs to the HIT family.
|
|
Entry name(Acc.no)
|
Q8FIN6
(
Q8FIN6
)
|
|
- Protein name
|
HIT-like protein ycfF.
|
|
- Synonyms
|
|
|
- Gene name
|
Name=ycfF; OrderedLocusNames=c1376;
|
|
- Comments
|
SIMILARITY:Contains 1 HTH tetR-type DNA-binding domain.
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
hinT
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
Chain A, Hit Family Hydrolase From Clostridium Thermocellum Cth-393
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
HIT-like protein ycfF
|
|
PSI-BLAST
|
Hypothetical HIT-like protein Synpcc7942_1390
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
hypothetical protein Z1742 [Escherichia coli O157:H7 EDL933]
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
HIT
|
| Sequences |
Amino acid
FASTA format
|
0001 MAEETIFSKI IRREIPSDIV YQDDLVTAFR DISPQAPTHI LIIPNILIPT VNDVSAEHEQ ALGRMITVAA
0071 KIAEQEGIAE DGYRLIMNTN RHGGQEVYHI HMHLLGGRPL GPMLAHKGL
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 AAGGTTGAAA GAGCAGGTTT AACTCGACCA
-070 TACTCTATAC TCGCAGTGTG GCGCGGCGTA GCATGGCGCA ACGCATGGCT ATTTGAAAAA GGAAAATGTC
0001 gtggcagaag aaactatatt cagcaaaatt attcgtcgtg agatcccctc cgatatcgtc taccaggatg
0071 atctggtaac ggcgtttcgc gatatttcgc cgcaagcgcc aacgcatatt ctgatcattc cgaatatcct
0141 cattccgact gtgaacgacg tctcagctga gcatgagcag gcgctgggac gcatgatcac cgtagcggca
0211 aaaattgctg agcaagaagg tattgccgaa gatggctatc gtctgatcat gaataccaac cgccatggcg
0281 gacaagaggt ttaccacatc catatgcact tgttgggtgg ccgtccgctg ggaccaatgc tggcgcataa
0351 aggtctgtaa CGATGAGAAA AGGATGCTTT GGGCTGGTGT CTCTGGTGTT GTTACTGCTG GTGGGCTGTC
0421 GTTCACATCC GGAAATTCCG GTGAATGATG AGCAATCGCT
|
