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PEC Original Annotations
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Essentiality
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Class
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non-essential
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References (PMID)
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Deletion
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Related gene (W3110 PEC)
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Gene Search
|
Search MG1655 PEC by gene name:
rarA
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Related strains
|
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Strains Search
|
Search strains by gene name:
rarA
Search strains by all related name:
rarA b0892 ECK0883 JW0875 mgsA ycaJ
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General information (Go to Linear View: )
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Gene Name
|
rarA
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Alternative name
|
b0892,ECK0883,JW0875,mgsA,ycaJ
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Location, Length
|
937,217 - 938,560
(
+
)
;
20.20
min
;
1344
(bp) ,
447
(aa)
|
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Product
|
DNA-dependent ATPase involved in processing recombination intermediates at replication forks
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Operon Name
|
lolA-rarA
|
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Note
|
putative polynucleotide enzyme
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Function
|
putative enzyme; Not classified
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Gene Ontology
|
GO:0000166
;
nucleotide binding ( rarA )
GO:0005515
;
protein binding ( rarA )
GO:0005524
;
ATP binding ( rarA )
GO:0005737
;
cytoplasm ( mgsA )
GO:0008929
;
methylglyoxal synthase activity ( mgsA )
GO:0016829
;
lyase activity ( mgsA )
GO:0017111
;
nucleoside-triphosphatase activity ( rarA )
GO:0019242
;
methylglyoxal biosynthetic process ( mgsA )
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PID
|
1787119
|
EC number
(KEGG Pathway)
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SWISS-PROT
(
Show simple
)
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Entry name(Acc.no)
|
YCAJ_ECOLI
(
P45526
;
P75833
)
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- Protein name
|
Hypothetical protein ycaJ.
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- Synonyms
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- Gene name
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Name=ycaJ; OrderedLocusNames=b0892, c1029, z1238, ECs0977;
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- Comments
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SIMILARITY:Strong, to H.influenzae HI1590 and C.burnetii homolog.
SIMILARITY:To yeast YNL218W.
CAUTION:Ref.7 sequence differs from that shown due to a frameshift in position 370.
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Homology Analysis
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BLAST
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Bacteria
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GTOP
|
ycaJ
(
homologous genes of other bacterias
)
mgsA
(
homologous genes of other bacterias
)
rarA
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
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PSI-BLAST
|
Chain A, Replication Factor C Adpnp Complex
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SWISS-PROT
(database updated :
2007.02.20
)
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BLAST
|
Hypothetical protein ycaJ
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PSI-BLAST
|
Chaperone clpB
|
|
nr
(database updated :
2007.02.20
)
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BLAST
|
putative polynucleotide enzyme [Escherichia coli O157:H7 str. Sakai]
|
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Pfam 28.0
(database updated :
2015-05
)
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Pfam
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PROSITE
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PROSITE
|
ASN_GLYCOSYLATION
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
TYR_PHOSPHO_SITE
MYRISTYL
AMIDATION
ATP_GTP_A
|
| Sequences |
Amino acid
FASTA format
|
0001 MSNLSLDFSD NTFQPLAARM RPENLAQYIG QQHLLAAGKP LPRAIEAGHL HSMILWGPPG TGKTTLAEVI
0071 ARYANADVER ISAVTSGVKE IREAIERARQ NRNAGRRTIL FVDEVHRFNK SQQDAFLPHI EDGTITFIGA
0141 TTENPSFELN SALLSRARVY LLKSLSTEDI EQVLTQAMED KTRGYGGQDI VLPDETRRAI AELVNGDARR
0211 ALNTLEMMAD MAEVDDSGKR VLKPELLTEI AGERSARFDN KGDRFYDLIS ALHKSVRGSA PDAALYWYAR
0281 IITAGGDPLY VARRCLAIAS EDVGNADPRA MQVAIAAWDC FTRVGPAEGE RAIAQAIVYL ACAPKSNAVY
0351 TAFKAALADA RERPDYDVPV HLRNAPTKLM KEMGYGQEYR YAHDEANAYA AGEVYFPPEI AQTRYYFPTN
0421 RGLEGKIGEK LAWLAEQDQN SPIKRYR
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 CTGAAATCCC AGCAAAATGG GGCTGTGGAT
-070 GCAGCGAAAT TTACCTTCAC CCCGCCGCAA GGCGTCACGG TAGATGATCA ACGTAAGTAG AGGCACCTGA
0001 gtgagcaatc tgtcgctcga tttttcggat aatacttttc aacctctggc cgcgcgtatg cggccagaaa
0071 atttagcaca gtatatcggc cagcaacatt tgctggctgc ggggaagccg ttgccgcgcg ctatcgaagc
0141 cgggcattta cattctatga tcctctgggg gccgccgggt accggcaaaa caactctcgc tgaagtgatt
0211 gcccgctatg cgaacgctga tgtggaacgt atttctgccg tcacctctgg cgtgaaagag attcgcgagg
0281 cgatcgagcg cgcccggcaa aaccgcaatg caggtcgccg cactattctt tttgttgacg aagttcaccg
0351 tttcaacaaa agccagcagg atgcatttct gccacatatt gaagacggca ccatcacttt tattggcgca
0421 accactgaaa acccgtcgtt tgagcttaat tcggcactgc tttcccgtgc ccgtgtctat ctgttgaaat
0491 ccctgagtac agaggatatt gagcaagtac taactcaggc gatggaagac aaaacccgtg gctatggtgg
0561 tcaggatatt gttctgccag atgaaacacg acgcgccatt gctgaactgg tgaatggcga cgcgcgccgg
0631 gcgttaaata cgctggaaat gatggcggat atggccgaag tcgatgatag cggtaagcgg gtcctgaagc
0701 ctgaattact gaccgaaatc gccggtgaac gtagcgcccg ctttgataac aaaggcgatc gcttttacga
0771 tctgatttcc gcactgcata agtcggtacg tggtagcgca cccgatgcgg cgctgtactg gtatgcgcga
0841 attattaccg ctggtggcga tccgttatat gtcgcgcgtc gctgtctggc gattgcgtct gaagacgtcg
0911 gtaatgccga tccacgggcg atgcaggtgg caattgcggc ctgggattgc tttactcgcg ttggcccggc
0981 ggaaggtgaa cgcgccattg ctcaggcgat tgtttacctg gcctgcgcgc caaaaagcaa cgctgtctac
1051 actgcgttta aagccgcgct ggccgatgct cgcgaacgcc cggattatga cgtgccggtt catttgcgta
1121 atgcgccgac gaaattaatg aaggaaatgg gctacgggca ggaatatcgt tacgctcatg atgaagcaaa
1191 cgcttatgct gccggtgagg tttacttccc gccggaaata gcacaaacac gctattattt cccgacaaac
1261 aggggccttg aaggcaagat tggcgaaaag ctcgcctggc tggctgaaca ggatcaaaat agccccataa
1331 aacgctaccg ttaaTGTTAT CGTTGCGGTA ATGTTGTTAC TGTATCCCTG TGGTCGCAGG CTGTGGCCAC
1401 ATCTCCCATT TAATTCGATA AGCACAGGAT AAGCATGCTC GATC
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