PEC Original Annotations
|
Essentiality
|
Class
|
essential
|
References (PMID)
|
|
Deletion
|
OCR10,11-11 (AK1-16 / BK2-16)
(D)
,
OCR10,11-16 (BK5-16 / AK7-16)
(D)
|
Related gene (W3110 PEC)
|
Gene Search
|
Search MG1655 PEC by gene name:
glyT
|
Related strains
|
Strains Search
|
Search strains by gene name:
glyT
Search strains by all related name:
glyT b3978 ECK3969 JWR0105 sumA sup15B supA36
|
General information (Go to Linear View:)
|
tRNA Name
|
glyT
|
Alternative name
|
b3978,ECK3969,JWR0105,sumA,sup15B,supA36
|
Location, Length
|
4,173,696 - 4,173,770
(
+
)
;
89.96
min
;
75
(bp) ,
|
Product
|
tRNA-Gly
|
Operon Name
|
thrU-tyrU-glyT-thrT-tufB
|
Note
|
anticodon: UCC
|
Function
|
|
Gene Ontology
|
|
PID
|
|
EC number
(KEGG Pathway)
|
|
Homology Analysis
|
BLAST
|
Bacteria
|
GTOP
|
|
PDB
(database updated :
2007.02.20
)
|
PSI-BLAST
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
BLAST
|
|
PSI-BLAST
|
|
nr
(database updated :
2007.02.20
)
|
BLAST
|
|
Pfam 28.0
(database updated :
2015-05
)
|
Pfam
|
|
PROSITE
|
PROSITE
|
|
MMBR References
|
Nature. 1981;294(5840):422-7.
Dual function transcripts specifying tRNA and mRNA.
Hudson L, Rossi J, Landy A.
(
7312036
)
|
J Mol Biol. 1990;212(4):579-98.
Genomic organization and physical mapping of the transfer RNA genes in Escherichia coli K12.
Komine Y, Adachi T, Inokuchi H, Ozeki H.
(
2184240
)
|
Cell. 1981;25(1):251-8.
Location of the tufB promoter of E. coli: cotranscription of tufB with four transfer RNA genes.
Lee JS, An G, Friesen JD, Fill NP.
(
6168388
)
|
Cell. 1979;16(3):523-34.
Structure and organization of the two tRNATyr gene clusters on the E. coli chromosome.
Rossi JJ, Landy A.
(
378394
)
|
Gene. 1980;12(1-2):33-9.
The nucleotide sequence of tufB and four nearby tRNA structural genes of Escherichia coli.
An G, Friesen JD.
(
7011904
)
|
Sequences |
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 GGCGTAGCCC GAGACGATAA GTTCGCTTAC
-070 CGGCTCGAAT AAAGAGAGCT TCTCTCGATA TTCAGTGCAG AATGAAAATC AGGTAGCCGA GTTCCAGGAT
0001 gcgggcatcg tataatggct attacctcag ccttccaagc tgatgatgcg ggttcgattc ccgctgcccg
0071 ctccaAGATG TGCTGATATA GCTCAGTTGG TAGAGCGCAC CCTTGGTAAG GGTGAGGTCG GCAGTTCGAA
0141 TCTGCCTATC AGCACCACTT CTTTTCTCCT CCCTG
|