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PEC Original Annotations
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|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
|
|
Deletion
|
DE(PLK1608)
,
OCL90-3
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
rsxE
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
rsxE
Search strains by all related name:
rsxE b1632 ECK1628 JW1624 o231 rnfE ydgQ
|
General information (Go to Linear View: )
|
|
Gene Name
|
rsxE
|
|
Alternative name
|
b1632,ECK1628,JW1624,o231,rnfE,ydgQ
|
|
Location, Length
|
1,708,852 - 1,709,547
(
+
)
;
36.83
min
;
696
(bp) ,
231
(aa)
|
|
Product
|
electron transport complex inner membrane NADH-quinone reductase required for the reduction of SoxR
|
|
Operon Name
|
ydgK-rsxABCDGE-nth
|
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Note
|
electron transport complex protein; GO_component: GO:0009274 - peptidoglycan-based cell wall
|
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Function
|
|
|
Gene Ontology
|
GO:0005886
;
plasma membrane ( rnfE )
GO:0006118
;
electron transport ( rnfE )
GO:0006810
;
transport ( rnfE )
GO:0016020
;
membrane ( rnfE )
GO:0016021
;
integral to membrane ( rnfE )
GO:0019866
;
organelle inner membrane ( rnfE )
|
|
PID
|
1787919
|
EC number
(KEGG Pathway)
|
|
|
SWISS-PROT
(
Show details
[
1
more]
)
|
Entry name(Acc.no)
|
RNFE_ECOLI
(
P77179
)
|
|
- Protein name
|
Electron transport complex protein rnfE.
|
|
- Synonyms
|
|
|
- Gene name
|
Name=rnfE; OrderedLocusNames=b1632;
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Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
rsxE
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
Electron transport complex protein rnfE
|
|
PSI-BLAST
|
Electron transport complex protein rnfE
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
COG4660: Predicted NADH:ubiquinone oxidoreductase, subunit RnfE [Shigella dysenteriae 1012]
|
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Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
ASN_GLYCOSYLATION
PKC_PHOSPHO_SITE
CK2_PHOSPHO_SITE
MYRISTYL
|
| Sequences |
Amino acid
FASTA format
|
0001 MSEIKDVIVQ GLWKNNSALV QLLGLCPLLA VTSTATNALG LGLATTLVLT LTNLTISTLR HWTPAEIRIP
0071 IYVMIIASVV SAVQMLINAY AFGLYQSLGI FIPLIVTNCI VVGRAEAFAA KKGPALSALD GFSIGMGATC
0141 AMFVLGSLRE IIGNGTLFDG ADALLGSWAK VLRVEIFHTD SPFLLAMLPP GAFIGLGLML AGKYLIDERM
0211 KKRRAEAAAE RALPNGETGN V
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 TACTCCCCGC GCGGTGGTTA ATGCGGTAAA
-070 ACGCGCCGGA TTGTACGCTC AGACGTTACC GGCACAACTT TCTCAACTTC CTGCCTGTGG AGAATAAAGC
0001 gtgagcgaaa ttaaagacgt tattgttcag gggttgtgga aaaacaactc tgcgctggtc cagttgctcg
0071 gcctttgtcc tctgttggcg gtcacgtcca ctgccactaa cgctctgggt ttaggacttg cgactacgct
0141 ggtactgacg ctgaccaacc tgaccatttc gacgctgcgt cactggacgc cagccgagat ccgcattccc
0211 atttacgtga tgatcatcgc ctcggtggtc agcgctgtac agatgctgat caacgcctac gcctttggcc
0281 tgtatcaatc attagggatt tttattccgc tgattgtcac taactgtatc gttgtgggcc gcgctgaagc
0351 cttcgccgcc aaaaaaggtc cggcgctttc ggcactggac ggcttttcaa ttggtatggg cgcaacctgc
0421 gccatgttcg tgctgggttc actacgcgaa attatcggca atggcacatt gtttgacggt gcagatgcgc
0491 tgttaggtag ctgggcaaaa gtattacgcg tggagatttt ccacaccgac tcccctttcc tgctggcgat
0561 gctgccacca ggtgcattta ttggcctggg actgatgctg gcaggaaaat acctgattga tgaaagaatg
0631 aaaaagcgcc gtgctgaagc agctgcagaa cgtgcattgc caaacggtga aacagggaat gtctgaTGAA
0701 TAAAGCAAAA CGCCTGGAGA TCCTCACTCG CCTGCGTGAG AACAATCCTC ATCCCACCAC CGAGCTTAAT
0771 TTCAGTTCGC CTTTTGAATT GCTGAT
|
