|
PEC Original Annotations
|
|
Essentiality
|
|
Class
|
non-essential
|
|
References (PMID)
|
Escherichia coli and Salmonella, Cellular and Molecular Biology Second Edition. ASM Press. 1996
Neidhart, F.C.
|
|
|
Deletion
|
ppdel-5
(LD)
,
OCL43
(D)
|
|
Related gene (W3110 PEC)
|
|
Gene Search
|
Search MG1655 PEC by gene name:
glyU
|
|
Related strains
|
|
Strains Search
|
Search strains by gene name:
glyU
Search strains by all related name:
glyU b2864 ECK2860 JWR0066 suA36 sufD sumB supT
|
General information (Go to Linear View: )
|
|
tRNA Name
|
glyU
|
|
Alternative name
|
b2864,ECK2860,JWR0066,suA36,sufD,sumB,supT
|
|
Location, Length
|
2,997,006 - 2,997,079
(
-
)
;
64.60
min
;
74
(bp) ,
|
|
Product
|
tRNA-Gly
|
|
Operon Name
|
glyU
|
|
Note
|
anticodon: CCC
|
|
Function
|
|
|
Gene Ontology
|
GO:0005515
;
protein binding ( sufD )
GO:0016226
;
iron-sulfur cluster assembly ( sufD )
|
|
PID
|
|
EC number
(KEGG Pathway)
|
|
|
Homology Analysis
|
|
BLAST
|
|
Bacteria
|
|
GTOP
|
sufD
(
homologous genes of other bacterias
)
|
|
PDB
(database updated :
2007.02.20
)
|
|
PSI-BLAST
|
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
|
|
PSI-BLAST
|
|
|
nr
(database updated :
2007.02.20
)
|
|
BLAST
|
|
|
Pfam 28.0
(database updated :
2015-05
)
|
|
Pfam
|
|
|
PROSITE
|
|
PROSITE
|
|
|
MMBR References
|
Microbiol. Rev. 1988;52:354-374.
Transfer ribonucleic acid-mediated suppression of termination codons in Escherichia coli.
Eggertsson, G., and D. Soll.
|
J Mol Biol. 1990;212(4):579-98.
Genomic organization and physical mapping of the transfer RNA genes in Escherichia coli K12.
Komine Y, Adachi T, Inokuchi H, Ozeki H.
(
2184240
)
|
| Sequences |
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 gggcagcaag ccaaaatgct gatggcgaat
-070 taatcagcag tcagcagcgt ggcacttgct aaggagagcg taaggtttat aatgccttac gcatctcgaa
0001 gcgggcgtag ttcaatggta gaacgagagc ttcccaagct ctatacgagg gttcgattcc cttcgcccgc
0071 tccaatttat cttcgccgta atacttcccc attttgttgt aaataaaaag cgtttacgca atgcaatcct
0141 tttgtaacaa cccaggtaaa acaccttatt ttca
|
