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PEC Original Annotations
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|
Essentiality
|
|
Class
|
essential
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|
References (PMID)
|
Escherichia coli and Salmonella, Cellular and Molecular Biology Second Edition. ASM Press. 1996
Neidhart, F.C.
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|
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Deletion
|
OCL85,86-8 (AK4-4 / BK6-4)
(D)
|
|
Related gene (W3110 PEC)
|
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Gene Search
|
Search MG1655 PEC by gene name:
rplT
|
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Related strains
|
|
Strains Search
|
Search strains by gene name:
rplT
Search strains by all related name:
rplT b1716 ECK1714 JW1706 pdzA
|
General information (Go to Linear View: )
|
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Gene Name
|
rplT
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Alternative name
|
b1716,ECK1714,JW1706,pdzA
|
|
Location, Length
|
1,797,417 - 1,797,773
(
-
)
;
38.74
min
;
357
(bp) ,
118
(aa)
|
|
Product
|
50S ribosomal subunit protein L20
|
|
Operon Name
|
thrS-infC-rpmI-rplT-pheMST-ihfA
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Note
|
50S ribosomal subunit protein L20, and regulator; GO_component: GO:0005737 - cytoplasm; GO_function: GO:0003735 - structural constituent of ribosome; GO_process: GO:0006412 - translation
|
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Function
|
structural component; Ribosomal proteins - synthesis, modification
|
|
Gene Ontology
|
GO:0000027
;
ribosomal large subunit assembly and maintenance ( rplT )
GO:0003723
;
RNA binding ( rplT )
GO:0003735
;
structural constituent of ribosome ( rplT )
GO:0005622
;
intracellular ( rplT )
GO:0005840
;
ribosome ( rplT )
GO:0006412
;
translation ( rplT )
GO:0019843
;
rRNA binding ( rplT )
GO:0030529
;
ribonucleoprotein complex ( rplT )
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PID
|
1788009
|
EC number
(KEGG Pathway)
|
|
|
Verified Protein Starts
(data
compiled from literature and appropriate citations are available from EcoGene)
|
|
EcoGene
|
rplT
(
EG10881
)
|
|
Number of removed
|
1 aa cleaved
|
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SWISS-PROT
(
Show details
)
|
Entry name(Acc.no)
|
RL20_ECOLI
(
P02421
;
Q47253
)
|
|
- Protein name
|
50S ribosomal protein L20.
|
|
- Synonyms
|
|
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- Gene name
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t1216;
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Homology Analysis
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BLAST
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Bacteria
|
|
GTOP
|
rplT
(
homologous genes of other bacterias
)
|
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PDB
(database updated :
2007.02.20
)
|
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PSI-BLAST
|
Chain O, Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans
|
|
SWISS-PROT
(database updated :
2007.02.20
)
|
|
BLAST
|
50S ribosomal protein L20
|
|
PSI-BLAST
|
50S ribosomal protein L20
|
|
nr
(database updated :
2007.02.20
)
|
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BLAST
|
50S ribosomal protein L20 [Escherichia coli O157:H7 EDL933]
|
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Pfam 28.0
(database updated :
2015-05
)
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Pfam
|
|
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PROSITE
|
|
PROSITE
|
CAMP_PHOSPHO_SITE
MYRISTYL
RIBOSOMAL_L20
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MMBR References
|
J Mol Biol. 1983;171(3):239-61.
Escherichia coli phenylalanyl-tRNA synthetase operon region. Evidence for an attenuation mechanism. Identification of the gene for the ribosomal protein L20.
Fayat G, Mayaux JF, Sacerdot C, Fromant M, Springer M, Grunberg-Manago M, Blanquet S.
(
6317865
)
|
| Sequences |
Amino acid
FASTA format
|
0001 MARVKRGVIA RARHKKILKQ AKGYYGARSR VYRVAFQAVI KAGQYAYRDR RQRKRQFRQL WIARINAAAR
0071 QNGISYSKFI NGLKKASVEI DRKILADIAV FDKVAFTALV EKAKAALA
|
Nucleotide
FASTA format
View sequence out neighbor 100bp
|
-100 tccaaaggcg atctgggcct ggtaatcgcg
-070 tgcctgccgt acgcataagc cgttaacgtt tttaactttt taattagaat atagatacag gagagcacat
0001 atggctcgcg taaaacgtgg tgttattgca cgtgcacgtc acaagaaaat tttgaaacaa gctaaaggct
0071 actacggtgc gcgttctcgc gtataccgcg ttgccttcca ggctgttatc aaagctggtc agtatgctta
0141 ccgtgaccgt cgtcaacgta agcgtcagtt ccgtcaactg tggattgcgc gtatcaacgc agcagcacgt
0211 cagaacggta tttcttacag caaattcatc aatggcctga aaaaagcctc tgttgaaatc gaccgtaaga
0281 tcctggctga tatcgcagta ttcgacaaag tagcgttcac cgctctggtt gaaaaagcga aagcagctct
0351 ggcataagcc agttgaaaga gggagctagt ctccctcttt tcgtttcaac gccatcaaaa cattgacttt
0421 tatcgccgta gccttttcaa taaaggtctt ttgaaga
|
